issues
search
lazear
/
sage
Proteomics search & quantification so fast that it feels like magic
https://sage-docs.vercel.app
MIT License
210
stars
39
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Why is deisotoping optional?
#49
Maithy15
closed
1 year ago
1
Multiple modifications to same residue
#48
maxochondria
closed
1 year ago
2
Fix sage quant output description
#47
lgatto
closed
1 year ago
0
Multiple hits of rank 1
#46
lgatto
closed
1 year ago
7
Quantitation
#45
lgatto
closed
1 year ago
5
Validation
#44
mknierman
closed
1 year ago
1
Version cloned is different from most recent release (v0.8.0)
#43
k-p4
closed
1 year ago
1
add missing trailing commas in example config file
#42
lgatto
closed
1 year ago
1
Move toward proforma compliance in open mod searches
#41
jspaezp
closed
1 year ago
2
Initial tests for non-specific digest (#37)
#40
lazear
closed
1 year ago
0
Rework modifications
#39
lazear
closed
1 year ago
0
Corrected a comma in the json example
#38
hbarsnes
closed
1 year ago
0
Support additional enzymes
#37
lazear
closed
1 year ago
8
Support additional modifications
#36
lazear
closed
1 year ago
0
How to deal with DIA data?
#35
wangshisheng
closed
1 year ago
1
Add procps to Docker image
#34
wfondrie
closed
1 year ago
0
Memory usage
#33
wenbostar
closed
1 year ago
15
Change docker image from Alpine to Debian
#32
wfondrie
closed
1 year ago
2
Enable SearchGUI integration
#31
lazear
closed
1 year ago
1
Enable integration with SearchGUI
#30
lazear
closed
1 year ago
0
Handle missing precursor charge information
#29
lazear
closed
1 year ago
0
Keep track of spectrum nativeIDs, rather than scan number
#28
lazear
closed
1 year ago
2
Enable integration with PeptideShaker
#27
lazear
closed
1 year ago
3
Try installing cross compiler
#26
lazear
closed
1 year ago
0
Enable direct reading from S3, refactor internals
#25
lazear
closed
1 year ago
0
update CI to compress binaries in archive at release
#24
Elendol
closed
1 year ago
3
Binaries built at release with platform names
#23
Elendol
closed
1 year ago
4
Implement picked-pepide & picked-protein FDR
#22
lazear
closed
1 year ago
0
Update readme to mention the github releases
#21
jspaezp
closed
1 year ago
1
Added bash to Docker container
#20
wfondrie
closed
1 year ago
0
Specify some parameters from the CLI
#19
wfondrie
closed
1 year ago
5
Add a Sage Docker image
#18
wfondrie
closed
1 year ago
1
Label free quant
#17
lazear
closed
1 year ago
3
Add build and release action
#16
wfondrie
closed
1 year ago
1
Fix for issues 12-14
#15
lazear
closed
2 years ago
0
Parsing mismatch of last protein sequence in fasta.rs
#14
isbluis
closed
2 years ago
1
Test does not run due to missing .fas file
#13
isbluis
closed
2 years ago
1
Typos in README sample parameters
#12
isbluis
closed
2 years ago
2
How to install?
#11
vdemichev
closed
2 years ago
4
Subtle difference in # of matched peaks between prelim and full score
#10
lazear
closed
2 years ago
0
System cannot find raw file
#9
ht-lau
closed
2 years ago
1
Feature overhaul: TMT, variable mods, integrated LDA
#8
lazear
closed
2 years ago
0
Lda fix
#7
lazear
closed
2 years ago
0
Option to search for optional modifications
#6
MKoesters
closed
2 years ago
3
Tmp
#5
lazear
closed
2 years ago
0
Deisotope
#4
lazear
closed
2 years ago
0
Rework decoy generation
#3
lazear
closed
2 years ago
0
Investigate PSM regression, re-engineer features for SVM, perf enhancements
#2
lazear
closed
2 years ago
0
Potential bug/regression
#1
lazear
closed
2 years ago
3
Previous