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lazear
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sage
Proteomics search & quantification so fast that it feels like magic
https://sage-docs.vercel.app
MIT License
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38
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v0.14.2
#88
lazear
closed
9 months ago
0
v0.14.1-alpha branch
#87
lazear
closed
9 months ago
0
Verbose, the process of running
#86
ypriverol
closed
9 months ago
9
Documentation/specification of precursor charge range
#85
jpfeuffer
closed
9 months ago
2
Wide open modification search with TMT level 2
#84
ludgergoeminne
closed
10 months ago
2
Redundancy between --fasta CLI argument and required fasta path in config file?
#83
j-berg
closed
10 months ago
2
TMT11 quantification on MS2 level?
#82
ningzhibin
closed
5 months ago
5
Support for feature extraction
#81
TheLostLambda
closed
10 months ago
7
Implement heapselect algorithm
#80
lazear
closed
11 months ago
0
Supports for cross-linking searching?
#79
yanze039
closed
11 months ago
1
Question: no search results on small mzMLs
#78
timosachsenberg
closed
11 months ago
5
Support compiling to WebAssembly
#77
TheLostLambda
closed
11 months ago
4
Convert mgf to mzml
#76
gsaxena888
closed
1 year ago
8
Output more than a single peptide for a scan
#75
gsaxena888
closed
1 year ago
1
LFQ output is empty
#74
tomthun
closed
11 months ago
11
Support for tims tof data
#73
tomthun
opened
1 year ago
13
Problem analysing tims-tof data
#72
tomthun
closed
1 year ago
3
Writing output files takes too long, uses too much memory
#71
lazear
closed
5 months ago
0
RT prediction is not saturating CPU, occasionally failing
#70
lazear
closed
1 year ago
0
Overhaul modifications: multiple variable mods, modifications of specific AA at termini
#69
lazear
closed
1 year ago
0
Support for SPS-MS3 quantification
#68
radusuciu
closed
1 year ago
7
Protein inference
#67
hannes-rezo
closed
1 year ago
2
Added a missing comma
#66
hbarsnes
closed
1 year ago
0
slightly better error messages for missing arguments and files
#65
Elendol
closed
1 year ago
6
Naming inconsistency in output files / documentation
#64
RalfG
closed
1 year ago
2
Support modification of amino acids at peptide or protein termini
#63
mvaudel
closed
1 year ago
2
Picked approaches for FDR are currently bugged
#62
lazear
closed
1 year ago
1
Feature request -- add sage version to returned config
#61
lgatto
closed
1 year ago
1
Error: unknown variant `tmt`
#60
lgatto
closed
1 year ago
9
Benchmarking datasets
#59
lgatto
closed
1 year ago
6
Decoy hits have label -1?
#58
lgatto
closed
1 year ago
2
Rename "file" to "filename" in quant.tsv
#57
lgatto
closed
1 year ago
0
LFQ2: Faster and much better
#56
lazear
closed
1 year ago
2
Request for c/z ions detection
#55
jamesknight21
closed
1 year ago
8
Same dataset different results
#54
tiagosobreira
closed
1 year ago
5
Running sage output in percolator
#53
timosachsenberg
closed
1 year ago
20
Global retention time alignment
#52
lazear
closed
1 year ago
2
Output directory
#51
maxochondria
closed
1 year ago
1
Specifying Temporary Directory
#50
kostrouc
closed
1 year ago
1
Why is deisotoping optional?
#49
Maithy15
closed
1 year ago
1
Multiple modifications to same residue
#48
maxochondria
closed
1 year ago
2
Fix sage quant output description
#47
lgatto
closed
1 year ago
0
Multiple hits of rank 1
#46
lgatto
closed
1 year ago
7
Quantitation
#45
lgatto
closed
1 year ago
5
Validation
#44
mknierman
closed
1 year ago
1
Version cloned is different from most recent release (v0.8.0)
#43
k-p4
closed
1 year ago
1
add missing trailing commas in example config file
#42
lgatto
closed
1 year ago
1
Move toward proforma compliance in open mod searches
#41
jspaezp
closed
1 year ago
2
Initial tests for non-specific digest (#37)
#40
lazear
closed
1 year ago
0
Rework modifications
#39
lazear
closed
1 year ago
0
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