Adding universe to functional enrichment analysis

lcdb / lcdb-wf

Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis

https://lcdb.github.io/lcdb-wf

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Adding universe to functional enrichment analysis #400

Closed Mira0507 closed 5 months ago

Mira0507 commented 5 months ago

The universe argument will be used to limit background genes only to detected genes in input dataset, when calling the enricher function in functional-enrichment.Rmd.

See https://github.com/YuLab-SMU/clusterProfiler/blob/devel/R/enricher.R#L8C21-L8C136 for the original usage.

Mira0507 commented 5 months ago

Closing.