Psocake (py2/py3)

Making Data Analysis for Free-Electron Lasers a piece of cake

Getting Started at LCLS

For newer experiments with vertical polarization (starting Run 18), use Psocake version v1.0.15 or higher with psana (ana-4.0.14-py3 or higher). Note that psocake has moved to python3 (and python2 is deprecated).

    source /reg/g/psdm/etc/psconda.sh -py3
    source /reg/g/cfel/crystfel/crystfel-dev/setup-sh # CrystFEL compatible version

For older experiments with horizontal polarization (before Run 18), use Psocake version v0.6.X. Python2 code is maintained in v00-06-00-branch.
For SFX, also source CrystFEL v0.8:

    source /reg/g/psdm/etc/psconda.sh
    source /reg/g/cfel/crystfel/crystfel-0.8.0/setup-sh # CrystFEL compatible version  

Installation

To make a local install of psocake, please add the following to your ~/.bashrc, where /<path-to-gitclone> is the location where you git cloned this repository:
export PATH=/<path-to-gitclone>/app:$PATH
export PYTHONPATH=/<path-to-gitclone>/:$PYTHONPATH
export PSOCAKE_FACILITY=LCLS

Tutorials

Serial Femtosecond Crystallography (SFX): https://confluence.slac.stanford.edu/display/PSDM/Psocake+SFX+tutorial

Single Particle Imaging (SPI): https://confluence.slac.stanford.edu/display/PSDM/Psocake+SPI+tutorial