leelabsg SKAT issues - Githubissues

leelabsg / SKAT

Sequence kernel association test (SKAT)

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SKAT_Null_Model_ChrX doesn't create model for Y chromosome if in Dichotomous output type and with adjustment

#24 CamilleGodi opened 1 month ago
0
Sample size (non-missing y and X) = 1763, which is < 2000. The small sample adjustment is applied!

#23 jingydz opened 1 month ago
0
Variants used name not available when only one variant is used for the test

#22 CamilleGodi opened 1 month ago
1
Change order of header file inclusions

#21 mykmal opened 10 months ago
0
SKAT_CommonRare_Robust.SSD.All() and SKATBinary_Robust.SSD.All() does not return resampling p.values

#20 Eduardo-Auer opened 10 months ago
0
Installation fails with R 4.3.0 and gcc 8.2.0

#19 mykmal opened 10 months ago
4
How to calculate the burden beta for a gene using p-value and the genotype matrix?

#18 jhylwq123 opened 11 months ago
0
Ensure SNP ID assignment for single variant case in SingleSNP_INFO

#17 DylanLawless closed 1 year ago
1
SKATO method uses seven rho's.

#16 baku4 opened 2 years ago
0
How to calculate the burden effect of the rare variants on the phenotype?

#15 ShiqiangCheng opened 2 years ago
1
Covariates table (i.e. SKAT.example$X) has names. Fix #11

#14 richelbilderbeek opened 3 years ago
1
On half call genotypes and covariates

#13 toyanji closed 2 years ago
3
Update Binary_MAIN_Robust.R

#12 ZhangchenZhao closed 3 years ago
0
Suggest: use example data with named covariate columns

#11 richelbilderbeek closed 2 years ago
4
Suggest: no use of attach in examples

#10 richelbilderbeek closed 3 years ago
4
Does SKAT perform well under recessive encoding?

#9 liutiming closed 2 years ago
1
minor fix for function SKATBinary_Robust.SSD.All

#8 psytky03 opened 4 years ago
1
SKAT_ChrX for genotype file with missing data

#7 qpyuan opened 4 years ago
0
Bug in SKATBinary_Robust.SSD.All

#6 gpovysil closed 2 years ago
7
Probably a typo in Binary_MAIN_Robust.R

#5 abhisheknrl closed 4 years ago
1
Memory requirements from creating unused diagonal matrix

#4 jmerkin closed 2 years ago
3
Sparse Version

#3 ZhangchenZhao closed 5 years ago
0
skat_NULL_emmaX

#2 juansearch closed 2 years ago
1
allow 1 covariate

#1 leekaiinthesky closed 7 years ago
1