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leffj
/
mctoolsr
Microbial community analysis tools in R
http://leffj.github.io/mctoolsr/
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Installation issue
#38
psinghuwa
opened
9 months ago
1
Fix Issue #36
#37
leffj
closed
2 years ago
0
mctoolsr not working after R update
#36
dmsande2
closed
2 years ago
2
calc_pairwise_permanovas error#1
#35
gafnialmog
closed
6 months ago
2
The condition has length > 1 and only the first element will be used (load_taxa_table)
#34
jarrodscott
closed
3 years ago
8
Error with calc_pairwise_permanovas
#33
Gian77
closed
6 months ago
4
minor figure edits
#32
cbfit
closed
6 months ago
1
Does calc_dm() relativize data before calculating bray-curtis?
#31
aalexiev
closed
6 months ago
2
Modify calc_mean_dissimilarities to resolve factor-mismatch bug
#30
hhollandmoritz
opened
6 years ago
0
removing OTUs from controls
#29
Jinx169
closed
6 years ago
2
adding n_perm to calc_pairwise_permanovas
#28
padpadpadpad
closed
7 years ago
1
n_perm on calc_pairwise_permanovas()
#27
padpadpadpad
closed
7 years ago
1
Issue loading data
#26
nidhiv13
closed
6 months ago
4
biomformat update issue R v3.3.3
#25
hhollandmoritz
closed
7 years ago
1
Mac Error Dont know how to decompress with extension 4-0
#24
gcuster1991
closed
7 years ago
2
add warning if filtering taxon that doesnt exist from table
#23
leffj
closed
6 months ago
1
Added examples, returns, and tests for "dissimilarity-based"
#22
jdiaz4302
closed
8 years ago
0
Add documentation and tests for diversity
#21
jdiaz4302
closed
8 years ago
0
pool samples function
#20
amoliverio
opened
8 years ago
0
export_otu_table
#19
leffj
closed
8 years ago
1
Made sure there was an @example and @return for every working functio...
#18
jdiaz4302
closed
8 years ago
0
.biom vs .txt loading w/euk SILVA classifications
#17
amoliverio
closed
8 years ago
3
problems loading data when mapping file contains less than 3 columns
#16
leffj
closed
8 years ago
1
accommodate variability in number of comment lines when loading taxa tables
#15
leffj
opened
8 years ago
0
add warning if missing a column in mapping file
#14
leffj
opened
8 years ago
0
export otu table bug
#13
amoliverio
closed
8 years ago
1
Add Spearman's correlation?
#12
tealpotter
opened
9 years ago
1
filter by OTU criteria
#11
amoliverio
opened
9 years ago
0
add functionality to `export_otu_table()`
#10
leffj
closed
9 years ago
1
Calculation of OTU-level overlap
#9
tobinhammer
closed
8 years ago
2
Pairwise PERMANOVA tests
#8
tobinhammer
closed
8 years ago
1
Mantel functionality
#7
tobinhammer
closed
9 years ago
1
Add 95% confidence interval ellipses to NMDS
#6
tobinhammer
opened
9 years ago
0
Filter by multiple sample categories
#5
tobinhammer
opened
9 years ago
1
Remove OTUs by OTU ID
#4
tobinhammer
closed
9 years ago
1
add informative error messages if no taxonomy and if filepath doesn't exist
#3
leffj
closed
9 years ago
0
pull taxonomic classifications when loading text format otu table
#2
leffj
closed
9 years ago
1
Alpha diversity analyses
#1
leffj
closed
9 years ago
1