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lfaino
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LoReAn
Long Reads Annotation pipeline
MIT License
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404 while downloading Augustus software and RepeatMasker software
#48
levcovenant
opened
1 year ago
1
Problem of the result of LoReAn
#47
LiantingFu
opened
1 year ago
1
LoReAn fails at braker in real dataset
#46
brennanhyden
opened
2 years ago
0
Running LoReAn via docker failed
#45
LarsGab
closed
2 years ago
1
LoReAn is need use too big memory
#44
xiaosefengyun
opened
3 years ago
2
RUNNING iASSEMBLER failed
#43
simoncchu
opened
3 years ago
5
running time of LoReAn
#42
simoncchu
closed
3 years ago
1
Error when running test data Crispa
#41
lazlostrange
opened
4 years ago
1
getRightStrand.py, IndexError: list index out of range
#40
codeatcg
opened
4 years ago
0
proteinAlign.py, unsupported operand type(s) for -: 'str' and 'int'
#39
codeatcg
opened
4 years ago
0
unauthorized (docker pull lfaino/lorean:latest)
#38
codeatcg
closed
4 years ago
1
Long reads error (IndexError: list index out of range)
#37
sajjadasaf
opened
4 years ago
0
salmon: error while loading shared libraries: liblzma.so.0
#36
jiali0411
opened
4 years ago
1
Error in getRightStrand.py
#35
stroehleina
closed
4 years ago
3
maker error
#34
sajjadasaf
closed
4 years ago
0
REPEATMASKER TO MASK THE GENOME# ERROR
#33
sajjadasaf
opened
4 years ago
0
Improvements: short reads
#32
nlapalu
opened
4 years ago
1
Problem (write permission) for braker
#31
nlapalu
closed
4 years ago
4
std::bad_alloc error due to excessive memory use by diamond v0.9.26.127 with larger protein data set
#30
stroehleina
closed
4 years ago
2
Raising ValueError when running LoReAn_example
#29
Yujiaxin419
closed
4 years ago
3
libopenblas.so.0 cannot open shared object file
#28
melop
closed
4 years ago
12
Lorean installation error
#27
ConcettaDe4
closed
4 years ago
30
errors during the run of Augustus
#26
michieitel
closed
5 years ago
43
--long_reads error
#25
ricardo-aaron
closed
4 years ago
7
work_dir option doesn't permit clean IO control
#24
nhartwic
closed
4 years ago
5
The created annotation are not correlating to mRNAseq data.
#23
max-biodatomics
closed
4 years ago
8
issue with interproscan module
#22
max-biodatomics
closed
5 years ago
3
Dockerfile should version pin third party software and retrieve them from upstream instead of using COPY
#21
eburgueno
closed
4 years ago
1
Optimised `Dockerfile` based on Best practices (ref: #19)
#20
eburgueno
opened
5 years ago
0
Unable to pull docker image lfaino/lorean:latest. Image is far too big
#19
eburgueno
opened
5 years ago
5
Missing runtime container listed in `INSTALL.md`
#18
eburgueno
closed
5 years ago
2
prepareEvmInputs.py, NameError
#17
zcrself
opened
5 years ago
19
raise ValueError("No lines parsed -- was an empty file provided?") ValueError: No lines parsed -- was an empty file provided?
#16
ncgrjsmiao
opened
5 years ago
76
STAR runtime
#15
ctxchris
closed
5 years ago
3
minimal intron length default
#14
maleasy
closed
5 years ago
4
Problems installing LoReAn
#13
csijcs
closed
4 years ago
8
singularity download ERROR
#12
YuntaoTan
closed
5 years ago
3
mask gff error: list index out of range
#11
iwangtoknow
closed
5 years ago
9
new dirsAndFiles.py error
#10
iwangtoknow
closed
6 years ago
5
Dictionary error.
#9
iwangtoknow
closed
6 years ago
21
Non-docker installation possible?
#8
yo54233154
closed
6 years ago
4
Minimal contig limitation?
#7
iwangtoknow
closed
6 years ago
6
Multiple adapter
#6
palfalvi
closed
6 years ago
5
annotation update failed, PASA error.
#5
iwangtoknow
closed
6 years ago
6
Run time
#4
abayega
closed
6 years ago
3
CRISPR test data fails
#3
danwiththeplan
closed
6 years ago
7
Clarify -u option
#2
danwiththeplan
closed
6 years ago
2
README.md
#1
lfaino
closed
7 years ago
0