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lh3
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bioawk
BWK awk modified for biological data
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VCF header causes NR mismatch
#47
janxkoci
opened
3 weeks ago
0
FR: add asorti function
#46
splaisan
opened
7 months ago
0
bioawk does not stop parsing a file on `nextfile`
#45
RamRS
opened
1 year ago
1
test
#44
klelizi
opened
1 year ago
0
Segmentation fault (core dumped)
#43
klelizi
opened
1 year ago
1
Avoid segfault on empty fastx file
#42
elmccarthy
opened
2 years ago
0
match with regexp does not work for me
#41
splaisan
closed
7 months ago
2
bioawk
#40
Fady63
closed
3 years ago
0
compilation fatal error - missing zlib.h
#39
janxkoci
closed
3 years ago
2
missing license for the repo
#38
chenrui333
opened
4 years ago
0
Segmentation fault on empty files
#37
blaiseli
opened
4 years ago
0
bioawk trimming the protein sequences in the start
#36
sujanpau
opened
4 years ago
0
fastq comment line
#35
phpeters
opened
4 years ago
0
bioawk vs awk give different results (locale-specific)
#34
janxkoci
closed
1 year ago
6
bioawk -c fastx sets OFS=\\t with no way to change it.
#33
hwalinga
opened
5 years ago
5
Put out new release tag since new functionality.
#32
twmccart
opened
5 years ago
1
Is is possible to extract the value of certain tag in sam file?
#31
y9c
opened
6 years ago
0
support multiple file of different format?
#30
y9c
opened
6 years ago
0
How to cite bioawk?
#29
zillurbmb51
closed
6 years ago
1
recipe for target 'ytab.o' failed
#28
PycnopodiaD
closed
6 years ago
2
[notbug] unexpected termination on fasta.gz
#27
korziner
opened
6 years ago
2
What is the license of bioawk?
#26
smoretti
opened
6 years ago
0
ARGIND not support by bioawk?
#25
wangyugui
closed
6 years ago
1
Add arithmetic meanqual
#24
conchoecia
opened
6 years ago
1
make fails
#23
splaisan
closed
7 years ago
2
fix markdown
#22
meereeum
closed
7 years ago
1
Fix GFF/GTF column naming, closes #16
#21
dpryan79
closed
7 years ago
1
Hex literals are misinterpreted
#20
UnkindPartition
closed
8 years ago
1
Installation issue
#19
ezjung
closed
8 years ago
1
revcomp bug?
#18
bernardo1963
opened
9 years ago
1
mv .gitigore .gitignore
#17
rvosa
opened
9 years ago
0
help for gff format
#16
dariober
closed
7 years ago
2
Added a Translate function
#15
ctSkennerton
closed
5 years ago
1
header: multiple input files causes multiple headers
#14
sjackman
opened
11 years ago
0
Tag a stable release version
#13
sjackman
closed
9 years ago
8
added fastx function, which is like sprintf for FASTA & FASTQ
#12
vsbuffalo
opened
11 years ago
0
Rename awk to bioawk and tawk to bioawkt
#11
sjackman
opened
11 years ago
1
added comment field
#10
vsbuffalo
closed
11 years ago
2
updated kseq.h to bring in empty line bug fix from klib/37b020f9db
#9
vsbuffalo
closed
11 years ago
0
bioawk -cfastx has a silent bug when parsing FASTA files with empty lines
#8
vsbuffalo
closed
11 years ago
1
addon.c:274:3: warning: implicit declaration of function ‘fileno’ ==> POSIX extension
#7
ghuls
closed
10 years ago
1
Make array of VCF info and GFF group field.
#6
ghuls
opened
12 years ago
1
header does not respect FS flag in BEGIN
#5
brentp
opened
12 years ago
1
Manual in rst format
#4
ialbert
opened
12 years ago
1
compile-time flag for setting OFS=FS="\t" as default for executable.
#3
brentp
closed
12 years ago
5
Added another light example for SAM->FASTA using revcomp() iff $flag & 16.
#2
arq5x
closed
12 years ago
0
Added gc() and meanqual().
#1
arq5x
closed
12 years ago
0