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bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
GNU General Public License v3.0
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bwa mem failed to locate index files
#386
isabelluo
opened
1 year ago
1
Update rle.h
#385
hartleys
closed
1 year ago
0
Extracting read pairs that have been concordantly aligned exactly 1 time
#384
poecile-palustris
opened
1 year ago
0
run-gen-ref
#383
StefanoLise
opened
1 year ago
0
bwa mem -a and -t options are incompatible?
#382
yazhinia
opened
1 year ago
0
mapping on subset of a bigger reference gives different results
#381
mewu3
opened
1 year ago
0
A error ouput for bwa mem
#380
fengchuiguo1994
opened
2 years ago
0
Multimapping and reference sequence junctions
#379
s-a-nersisyan
opened
2 years ago
0
[M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (0, 0, 0, 0)
#378
crispychilli
opened
2 years ago
0
bwa mem -a output all alignments for SE or unpaired PE
#377
fanshu1986
opened
2 years ago
1
bwa mem or bwa sw
#376
Oksanak22
opened
2 years ago
0
bwa mem ont2d
#375
Oksanak22
closed
2 years ago
2
re compiling bwa on mac (M1)
#374
haircell
opened
2 years ago
2
The official full names of "bntseq", "bntann", "bntamb", "bns".
#373
mathgirl796
opened
2 years ago
0
Number of characters per line for a reference sequence
#372
olu2016
opened
2 years ago
0
Trailing whitespace in SAM file
#371
dylanlawrencebio
closed
2 years ago
2
tied matches of bwa and bowtie2
#370
jianshu93
closed
2 years ago
1
Added -fPIC as compile flag
#369
lennykovac
opened
2 years ago
0
Add HLA-DPB1 typing
#368
Gerde
opened
2 years ago
0
Add CI job for Ubuntu 20.04 aarch64
#367
martin-g
closed
2 years ago
3
add break condition to making cigar string
#366
gayoung-MetisX
opened
2 years ago
0
add condition to BSW in case of reversing
#365
gayoung-MetisX
opened
2 years ago
0
Adding chm13 option in bwakit
#364
mikecuoco
opened
2 years ago
0
T2T-CHM13 index file not recognized
#363
abbeythorpe
opened
2 years ago
0
add break condition to making cigar string
#362
gayoung-MetisX
opened
2 years ago
0
add condition to BSW in case of reversing
#361
gayoung-MetisX
opened
2 years ago
0
Different alignment numbers to same reference sequence
#360
stewalsh04
opened
2 years ago
0
Add ARM Neon and scalar implementations of SIMD functions
#359
jmarshall
closed
2 years ago
8
bwa aln returning less alignments for higher number of mismatches
#358
Jfortin1
opened
2 years ago
2
bwa mem fails to identify paired-end sequences with 'not enough pairs' message
#357
cokelaer
closed
1 month ago
6
Bug: bwa aln misreports alignment contigs
#356
mattsoup
opened
2 years ago
1
Document that the XB tag now contains the mapping quality too
#355
clintval
closed
2 years ago
0
the 1st file has fewer sequences
#354
happyrainbows
opened
2 years ago
0
install bwa 0.7.17 in alpine docker image
#353
cmccabe0728
opened
2 years ago
1
how to attach XM tag
#352
S-111
closed
2 years ago
1
reproducible bug: number of read mapped is proportional to number of cores
#351
Sanrrone
opened
2 years ago
0
improper read pair status given; for pairs falling outside insert size boundaries for low complexity amplicon library
#350
alexander-e-f-smith
closed
2 years ago
1
Failed Installation on MacOS M1
#349
josoga2
opened
2 years ago
1
Use SAM headers from index directory's `<prefix>.hdr` if it exists
#348
jmarshall
opened
2 years ago
6
bwa: bntseq.c:428: bns_fetch_seq: Assertion `*beg <= mid && mid < *end' failed.
#347
ZZH19999
opened
2 years ago
1
Avoid conflicting with HTSlib's kstring.c functions
#346
jmarshall
opened
2 years ago
0
bugfix: HD line should be printed before SQ
#345
nh13
closed
2 years ago
2
Add support for Arm/Aaarch64.
#344
nh13
closed
2 years ago
3
Update bwa.1 to remove ancient reference to picard
#343
nh13
closed
2 years ago
0
postalt.js MAPQ 0 on both chr17 and Alternate Contigs
#342
DarioS
opened
2 years ago
1
Does increasing memory cause a difference in BWA results?
#341
losted-star
opened
2 years ago
1
Question about mate rescue and MAPQ. The same alignments, different results
#340
shenghuanjie
closed
2 years ago
1
BWA aln runs slower for first time and subsequent runs are faster
#339
rjg2186
opened
2 years ago
4
bwa mem - fastq sequence order
#338
Fazulur
closed
2 years ago
2
genome .alt file
#337
denise0593
opened
2 years ago
0
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