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lh3
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seqtk
Toolkit for processing sequences in FASTA/Q formats
MIT License
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A bug about seqtk
#66
WinterLi1993
closed
8 years ago
3
A question ： about fastq quality encode
#65
WinterLi1993
closed
8 years ago
1
Force reduced memory usage in random sampling
#64
ingkebil
closed
8 years ago
1
How to remove ambiguities?
#63
Biomicrogen
opened
8 years ago
4
Ability to exclude reads
#62
deprekate
opened
9 years ago
6
seqtk trimfq -l 50 in.fq > out.fq have much reads longer than 50bp.
#61
zengfengbo
closed
8 years ago
3
clarify licensing
#60
wwood
closed
8 years ago
1
add LICENSE file
#59
blahah
closed
9 years ago
1
Add a LICENSE to the code
#58
blahah
closed
9 years ago
1
seqtk seq - need way split .fq into R1, R2 and orphan SE ?
#57
tseemann
opened
9 years ago
3
How to interlace pair-end reads via seqtk and make the headers end in /1 and /2 corresponding to its read orientation (R1 and R2, respectively)?
#56
yoyohashao
opened
9 years ago
1
How to interlace pair-end reads via seqtk?
#55
yoyohashao
closed
9 years ago
0
Allow for appending to sequence id with RENAME
#54
deprekate
opened
9 years ago
2
Move "bwa mergepe" to seqtk
#53
tseemann
closed
8 years ago
1
commad -> command
#52
zachcp
closed
9 years ago
1
seqtk doesn't support the full range of ambiguity codes.
#51
hexylena
closed
9 years ago
1
Not an issue... Permission to add seqtk to Archlinux User Repositories?
#50
cyrilcros
closed
8 years ago
1
unsorted output when using seqtk subseq
#49
peterdfields
closed
9 years ago
1
Differences between setk and Biopython fastq-solexa conversion
#48
gittaylor
closed
8 years ago
2
Explain seqtk comp columns
#47
slowkow
closed
9 years ago
6
subseq => core dumped
#46
ndaniel
opened
9 years ago
8
seqtk truncating file
#45
inti
closed
9 years ago
0
subseq doesn't work
#44
tkatsuki
closed
9 years ago
2
fixes occasional issue when reading from pipes
#43
kloetzl
closed
9 years ago
7
writing XA tags for primary alignments in bwa-mem bams
#42
elzbth
closed
8 years ago
0
demultiplexing
#41
danielecook
closed
8 years ago
2
Ability to process quality (.qual) files
#40
deprekate
opened
9 years ago
1
Tag a recent stable release
#39
sjackman
closed
8 years ago
5
added -B/-E to trimfq for keeping first/last INT bp"
#38
ndaniel
closed
8 years ago
3
suggestion for trimfq q=0
#37
ndaniel
closed
8 years ago
2
Add installation instructions to the README
#36
robinandeer
closed
8 years ago
1
fastq to fasta losing records
#35
jffkm
closed
10 years ago
3
seqtk subseq and indexed FASTA files
#34
vsbuffalo
closed
10 years ago
1
CLI option to remove adaptor sequence from read sequence
#33
kdm9
closed
9 years ago
1
Output the comment if there is one in trimadap.c
#32
kdm9
closed
9 years ago
0
sample adds ' correct' suffix to read name
#31
suryasaha
closed
10 years ago
1
Only test for successful buffer allocation if a buffer needs to be allocated
#30
bwlang
closed
10 years ago
0
Cannot use a fraction < 1 with seqtk sample
#29
bwlang
closed
8 years ago
1
seqtk subseq -l option
#28
jcgrenier
closed
10 years ago
1
problem installing/using seqtk
#27
azela82
closed
10 years ago
8
Read input from stdin
#26
boulund
closed
10 years ago
2
Add oversample option to seqtk sample
#25
kdm9
closed
9 years ago
3
fix segfault in seqtk sample with large N
#24
kdm9
closed
10 years ago
0
tabtk cut: loss of empty columns
#23
wouterg91
closed
6 years ago
1
Add in support for Mersenne Prime Twister PRNG
#22
wasade
closed
10 years ago
2
Add prepend and append functions to seqtk seq
#21
kdm9
closed
9 years ago
0
support trimming of paired end reads by interleave -> trim -> re-pair
#20
brentp
closed
9 years ago
1
add 'interleave' command
#19
brentp
closed
9 years ago
1
mutfa: Add option to allow mutating a nucleotide with the same case as the reference nucleotide
#18
ghuls
opened
10 years ago
0
keeps fasta/fastq comments in header when using subseq
#17
hliang
closed
10 years ago
0
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