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lh3
/
seqtk
Toolkit for processing sequences in FASTA/Q formats
MIT License
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New version release?
#115
jpuritz
closed
6 years ago
5
error return value
#114
mjpworth
closed
6 years ago
2
nothing in .fa file when converting fastq to fasta
#113
climbandseq
closed
6 years ago
7
seqtk sample in a loop
#112
SimonMorvan
closed
6 years ago
4
Sampling single reads failed
#111
suzuki-shm
closed
6 years ago
3
seqtk sample adding ">" to some read IDs
#110
mclaugsf
closed
6 years ago
3
seqtk mergepe produces invalid FASTQ output on empty input sequences
#109
tskir
closed
6 years ago
5
seqtk sample runs forever if input file does not exist
#108
lowandrew
closed
6 years ago
3
Batch fastq_to_fasta: how to append output file name?
#107
Opinel99
closed
6 years ago
1
New seqtk release
#106
unode
closed
6 years ago
2
Retriving fastq but no result
#105
aungthurhahein
closed
6 years ago
2
Lost 2 lines of my fastq file when reverse complementing the file
#104
senaj
closed
6 years ago
3
make install target
#103
fxcoudert
closed
6 years ago
1
return exit code from called function
#102
a1an77
closed
6 years ago
1
trimfq to drop seq under minlen and output cutpoints
#101
a1an77
opened
6 years ago
1
seqtk compile error from zlib-1.2.8 (using CodeBlocks)
#100
rmd13
closed
6 years ago
1
Rename the read ID
#99
jiangzy26
opened
6 years ago
1
support fasta output with subseq
#98
tolot27
closed
6 years ago
2
Adapt the package to read bunzipped fastq files?
#97
rbpisupati
closed
6 years ago
1
Sample procudes different numbers of reads despite seed being set
#96
hhollandmoritz
closed
6 years ago
8
Extract fasta from ID not working
#95
catalinaguilar
closed
7 years ago
0
Error while converting fastq to fasta
#94
PSchneeb
opened
7 years ago
2
Seqtk seq fastq to assembled.fa
#93
Gabriellavp
closed
6 years ago
9
Trimming paired end reads with seqtk
#92
divy-kangeyan
closed
6 years ago
2
added -B/-E to trimfq for keeping first/last INT bp and also -s for shortest read
#91
ndaniel
opened
7 years ago
1
added -B/-E to trimfq for keeping first/last INT bp and also -s for shortest read
#90
ndaniel
closed
7 years ago
3
Citing seqtk
#89
ShobanaSekar
closed
6 years ago
4
Feature/auto version
#88
LukeGoodsell
closed
7 years ago
2
seqtk fqchk - gives odd result if given .fa not .fq
#87
tseemann
opened
7 years ago
1
Add docs for seqtk sample requesting more reads than total
#86
tshtatland
opened
7 years ago
7
read names changed?
#85
patidarr
opened
7 years ago
1
position index in rename
#84
dridk
opened
7 years ago
1
strange output by seqtk trimfq
#83
zengfengbo
closed
7 years ago
1
mergpe: Pair up uneven paired FASTQ files [feature request]
#82
sjackman
opened
7 years ago
9
fastq fasta generator
#81
dridk
closed
7 years ago
2
subseq losing paired end info
#80
freelancer84
closed
7 years ago
2
Uncomplete output with seqtk sample
#79
annaquaglieri16
closed
8 years ago
1
extracting isoforms with wildcard?
#78
KhudyakovLab
closed
7 years ago
1
SEQTK: Convert illumina1.5 to illumina 1.9
#77
muhammadsohailraza
opened
8 years ago
1
License
#76
wwood
closed
7 years ago
3
Problem in running CutAdapt
#75
muhammadsohailraza
closed
8 years ago
0
Seq and qual on the same line
#74
demis001
closed
8 years ago
1
Checking if pointers are valid when opening and reading files in kseq…
#73
uzbit
opened
8 years ago
0
gcc 5.3 warnings regarding static vs inline
#72
tseemann
closed
8 years ago
1
subseq ignores strand from BED file
#71
RoyChaudhuri
opened
8 years ago
2
Add section on how to install seqtk
#70
jooolia
closed
8 years ago
1
subseq not using the strand information in bed
#69
pengchy
closed
8 years ago
2
The subseq function adds tabs to the sequence headers
#68
deprekate
closed
8 years ago
4
Removing whitespace from sequence
#67
maasha
closed
8 years ago
2
A bug about seqtk
#66
WinterLi1993
closed
8 years ago
3
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