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lh3
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seqtk
Toolkit for processing sequences in FASTA/Q formats
MIT License
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README.md points to package in common Linux distros
#165
smoe
opened
3 years ago
0
Sample ignores reads zero length reads
#164
nh13
opened
3 years ago
0
problem installing/running
#163
ctob2
opened
3 years ago
1
subsample reads from an interleaved fastq file
#162
fgvieira
closed
10 months ago
1
could not ‘make’ in gcc 10.1.0 manjaro
#161
shinepreventer
closed
3 years ago
1
Have cutN report N:s also at beginning of sequence
#160
kpalin
opened
4 years ago
0
[feature] kmer counting
#159
shouldsee
closed
4 years ago
3
Seqtk sample ignores random seed
#158
MatthewRalston
closed
4 years ago
0
Subseq exclude list
#157
weedcentipede
opened
4 years ago
1
Retrieve paired-end reads with their mates
#156
iquasere
opened
4 years ago
1
sampling compressed files
#155
dalilasss
closed
4 years ago
3
set seed with different samples
#154
kaiwang12
closed
4 years ago
1
Add help to the cli and README for split
#153
ljyanesm
closed
3 years ago
1
Extract Sequences in a Defined Order
#152
perryguog
opened
4 years ago
0
Can seqtk extract first xx nt from the left end or right end
#151
Edison2021
closed
4 years ago
0
the size of file is different
#150
Hulanyue
closed
4 years ago
1
fastqc outofmemoryError from seqtk generated files
#149
wbsimey
opened
4 years ago
1
Add '-E max_len' to 'seqtk seq'
#148
tseemann
opened
4 years ago
0
add argument -o to seqtk sample to output sampled library to zip file
#147
wulj2
closed
4 years ago
0
Unusual behavior due to asterix shell expansion
#146
deprekate
closed
4 years ago
2
seqtk sample gives empty output
#145
Gil-marquez
closed
4 years ago
3
f
#144
Gil-marquez
closed
4 years ago
0
seqtk subseq inserting line break after 1024 characters
#143
nqp3
closed
4 years ago
4
Update Makefile to play nice with bioconda
#142
andersgs
closed
1 year ago
0
seqtk subseq error id with whitespace
#141
fengyq
closed
4 years ago
2
Could not allocate enough memory for 90576558080 sequences
#140
Antony-1996
opened
4 years ago
2
Failure to covert Fastq to fastA
#139
orchid677
closed
5 years ago
2
modified a typo in the license
#138
lidd77
opened
5 years ago
0
what does the meanning of '-Wno-unused-function' ?
#137
lidd77
closed
5 years ago
3
Can seqtk filter the reads by length?
#136
henganl2
opened
5 years ago
1
Sample Command Doesn't Work With Process Substitution
#135
DarioS
closed
5 years ago
1
Request: Add seqtk shuffle command to randomise order of reads
#134
peterjc
opened
5 years ago
1
add -r for stk_subseq to remove seq
#133
alienzj
opened
5 years ago
2
add -r for stk_subseq to remove seq
#132
alienzj
closed
5 years ago
1
Type conversion from void* to unsigned char*
#131
cjain7
closed
5 years ago
1
Add some structure to the code
#130
kounkou
closed
5 years ago
0
Adding some structure to the code
#129
kounkou
closed
5 years ago
2
subseq -t
#128
MrLocuace
closed
5 years ago
3
install error
#127
xiaohongniua
closed
5 years ago
1
compiling error
#126
ldutoit
closed
5 years ago
2
Cleanup Makefile to respect users environment.
#125
mmokrejs
opened
5 years ago
1
seq -A identifies ">" in FASTQ as FASTA header
#124
ZeweiSong
closed
5 years ago
4
improve parsing performance
#123
kloetzl
closed
5 years ago
1
Trouble installing seqtk
#122
jullee
closed
5 years ago
1
seqtk: command not found
#121
Roopali24
opened
5 years ago
7
warning installing seqtk
#120
andrewSharo
closed
5 years ago
2
Feature request: seqtk seq: multiline to single line Fasta
#119
oschwengers
closed
5 years ago
2
Issue with fastq after converting phred 64 to phred 33 quality scores
#118
kgaonkar6
opened
6 years ago
1
Release version 1.3 and update README.md with -F example
#117
jpuritz
closed
6 years ago
0
rename full header
#116
nwespe
opened
6 years ago
10
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