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liampshaw / mobile-gene-regions

Analysing the genomic context of mobile genes
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generate BigQuery for a gene #4

Closed liampshaw closed 1 year ago

liampshaw commented 1 year ago

helper script: to use the information from AMRfinderPlus or CARD database to generate SQL query for a given gene family to prepare input files for the pipeline

liampshaw commented 1 year ago

Querying NCBI assemblies via https://www.ncbi.nlm.nih.gov/pathogens/microbigge/ is now explained in the tutorial.