issues
search
lianos
/
multiGSEA
NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept here for posterity.
https://lianos.github.io/multiGSEA/
MIT License
21
stars
2
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Cleanup GeneSetDb constructor S3 promotion
#32
lianos
opened
4 years ago
0
Implement eigenWeightedZscore
#31
lianos
opened
4 years ago
0
Renames "enrichtest" to "ora" (overrepresentation analysis)
#30
lianos
closed
4 years ago
0
Facile concordance
#29
lianos
closed
4 years ago
0
Debug mgheatmap,recenter parameter and implementation
#28
lianos
opened
4 years ago
0
Configure travis to use docker container
#27
lianos
opened
4 years ago
0
Explore using BiocSet instead of GeneSetDb
#26
lianos
opened
5 years ago
0
Updated to use GeneSetDb.MSigDB as the MSigDB provider
#25
lianos
closed
5 years ago
0
Robust support for data.frame inputs to multiGSEA()
#24
lianos
opened
5 years ago
0
Fix mgheatmap,gs.order param functionality
#23
lianos
opened
5 years ago
1
Enable custom color specification for iplot
#22
lianos
opened
5 years ago
0
R CMD check failures
#21
mukhyala
closed
5 years ago
3
Add support for row with the same value in all column in eigenWeightedMean
#20
darsoo
closed
5 years ago
1
missing testdata file
#19
mukhyala
closed
5 years ago
1
Add option to mgheatmap to show average absolute abundance of genes
#18
lianos
opened
5 years ago
0
Failing tests
#17
mukhyala
closed
5 years ago
4
Support gene identifier conversion in getReactomeGeneSetDb
#16
tomsing1
opened
5 years ago
2
Add support to handle (sparse) Matrix expression objects
#15
lianos
opened
5 years ago
0
Add a variable list of genes per geneset to output of result()s
#14
lianos
opened
5 years ago
0
addGeneSetMetadata should be a setReplaceMethod
#13
lianos
closed
5 years ago
0
Improve GeneSetDb subsetting
#12
lianos
opened
5 years ago
0
Add support for ANOVA-like analyses in multiGSEA()
#11
lianos
opened
5 years ago
2
GSVA methods run through scoreSingleSamples are a bit off
#10
lianos
opened
5 years ago
0
getPantherGeneSetDb error
#9
tomsing1
opened
6 years ago
0
Use irlba::svdr in gsdScore function
#8
lianos
opened
6 years ago
0
multiGSEA fails to report camera results for a GeneSetDb that contains only a single gene set
#7
tomsing1
closed
6 years ago
0
Add `singscore` as option to `scoreSingleSamples`
#6
lianos
opened
6 years ago
0
Missing goseq dependency doesn't trigger an error in multiGSEA when 'goseq' method is specified
#5
tomsing1
closed
6 years ago
1
Fixed a few typos
#4
tomsing1
closed
6 years ago
0
Hard to debug error
#3
mukhyala
closed
6 years ago
5
Make MSigDB GeneSetDb fetching more robust
#2
lianos
opened
6 years ago
6
version bump for updated README
#1
lianos
closed
6 years ago
0