lianos multiGSEA issues

lianos / multiGSEA

NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept here for posterity.

https://lianos.github.io/multiGSEA/

MIT License

21 stars 2 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Cleanup GeneSetDb constructor S3 promotion

#32 lianos opened 4 years ago
0
Implement eigenWeightedZscore

#31 lianos opened 4 years ago
0
Renames "enrichtest" to "ora" (overrepresentation analysis)

#30 lianos closed 4 years ago
0
Facile concordance

#29 lianos closed 4 years ago
0
Debug mgheatmap,recenter parameter and implementation

#28 lianos opened 4 years ago
0
Configure travis to use docker container

#27 lianos opened 4 years ago
0
Explore using BiocSet instead of GeneSetDb

#26 lianos opened 5 years ago
0
Updated to use GeneSetDb.MSigDB as the MSigDB provider

#25 lianos closed 5 years ago
0
Robust support for data.frame inputs to multiGSEA()

#24 lianos opened 5 years ago
0
Fix mgheatmap,gs.order param functionality

#23 lianos opened 5 years ago
1
Enable custom color specification for iplot

#22 lianos opened 5 years ago
0
R CMD check failures

#21 mukhyala closed 5 years ago
3
Add support for row with the same value in all column in eigenWeightedMean

#20 darsoo closed 5 years ago
1
missing testdata file

#19 mukhyala closed 5 years ago
1
Add option to mgheatmap to show average absolute abundance of genes

#18 lianos opened 5 years ago
0
Failing tests

#17 mukhyala closed 5 years ago
4
Support gene identifier conversion in getReactomeGeneSetDb

#16 tomsing1 opened 5 years ago
2
Add support to handle (sparse) Matrix expression objects

#15 lianos opened 5 years ago
0
Add a variable list of genes per geneset to output of result()s

#14 lianos opened 5 years ago
0
addGeneSetMetadata should be a setReplaceMethod

#13 lianos closed 5 years ago
0
Improve GeneSetDb subsetting

#12 lianos opened 5 years ago
0
Add support for ANOVA-like analyses in multiGSEA()

#11 lianos opened 5 years ago
2
GSVA methods run through scoreSingleSamples are a bit off

#10 lianos opened 5 years ago
0
getPantherGeneSetDb error

#9 tomsing1 opened 6 years ago
0
Use irlba::svdr in gsdScore function

#8 lianos opened 6 years ago
0
multiGSEA fails to report camera results for a GeneSetDb that contains only a single gene set

#7 tomsing1 closed 6 years ago
0
Add `singscore` as option to `scoreSingleSamples`

#6 lianos opened 6 years ago
0
Missing goseq dependency doesn't trigger an error in multiGSEA when 'goseq' method is specified

#5 tomsing1 closed 6 years ago
1
Fixed a few typos

#4 tomsing1 closed 6 years ago
0
Hard to debug error

#3 mukhyala closed 6 years ago
5
Make MSigDB GeneSetDb fetching more robust

#2 lianos opened 6 years ago
6
version bump for updated README

#1 lianos closed 6 years ago
0