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liaoherui
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StrainScan
High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers
https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-023-01615-w
MIT License
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use a custom database to identify strains give IndexError: list index out of range
#21
wsyjh
opened
3 months ago
3
数据库构建 killed
#20
wll4213
opened
3 months ago
2
Genomes used to build the database
#19
Wenhai-Zhang
opened
5 months ago
1
Issue with StrainScan_build during database construction
#18
BZhao95
opened
5 months ago
1
How to infer different species-level abundances based on strain-level abundances
#17
xujialupaoli
opened
5 months ago
5
Error in building a custom database
#16
sahilrishav2
closed
7 months ago
6
ZeroDivisionError: division by zero
#15
rafalkolenda
closed
8 months ago
4
构建本地数据库报错
#14
lisa4109
closed
8 months ago
3
IndexError: list index out of range
#13
wangqi0000
closed
7 months ago
9
Build custom database use too much memory
#12
wsyjh
closed
8 months ago
1
How to create custom databases
#11
NamenloseHeldin
opened
9 months ago
19
How to create custom databases
#10
mradz19
closed
9 months ago
27
Error for the usage of parameter "-b"
#9
wangqi0000
closed
9 months ago
1
unrecognized arguments: -j (v. 1.0.10)
#8
camilagazolla
closed
9 months ago
1
How to compare sequencing depth between different samples
#7
flashton2003
closed
1 year ago
3
Output explanation - different total kmers and relationship between depth and coverage
#6
flashton2003
closed
1 year ago
3
updated build_tree code
#5
nick-youngblut
opened
1 year ago
1
updates to StrainScan_build.py
#4
nick-youngblut
closed
1 year ago
0
system calls: not report on errors
#3
nick-youngblut
closed
1 year ago
2
paired-end, interleaved, or just read1?
#2
nick-youngblut
closed
1 year ago
5
Bugs with database construction, strain scanning
#1
jdwinkler-lanzatech
closed
1 year ago
2