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SpaGene is a R package to find spatially variable genes and colocalized gene pairs from spatial omics data.
library(devtools)
install_github("liuqivandy/SpaGene")Liu Q, Hsu Chih-Yuan, Shyr Yu. Scalable and model-free detection of spatial patterns and colocalization, Genome Research,2022(doi: 10.1101/gr.276851.122)