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lmoffatt
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macro_dr
GNU General Public License v3.0
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error in the initialization of emcee_stat, thermo_stat and walker_stat
#210
lmoffatt
closed
3 months ago
0
Change control of the reporting frequency
#209
lmoffatt
closed
3 months ago
1
have a proper control of the parameter runs entered by the configuration files
#208
lmoffatt
closed
3 months ago
3
Automatic initialization of the dynamic temperature algorithm
#207
lmoffatt
closed
4 months ago
0
differentiate two ways of suming moments distributions: increase sample or sum up variables.
#206
lmoffatt
closed
4 months ago
0
Calculate onrun an approximation for the effective sample size of the emcee sampler
#205
lmoffatt
closed
4 months ago
1
implement a class for continuous actualization of moments
#204
lmoffatt
closed
4 months ago
0
Implement the Dynamic Temperature Selection algorithm
#203
lmoffatt
closed
4 months ago
3
definitive runs for the paper
#202
lmoffatt
closed
3 months ago
2
conceptual error in Allosteric models, schemes with tertiary interactions are wrong (schemes 8, 11 and 12 and 15)
#201
lmoffatt
closed
4 months ago
1
make_Conformational_states_and_index does not use the conductance to find the states.
#200
lmoffatt
opened
5 months ago
0
SaveRates SaveStates
#199
lmoffatt
closed
3 months ago
0
final push for levenberg
#198
lmoffatt
closed
3 months ago
0
equilibrium likelihood of new version is lower than previous version
#197
lmoffatt
closed
3 months ago
1
implement logging the parameters that produces errors
#196
lmoffatt
closed
6 months ago
0
implement step and thermo statistics
#195
lmoffatt
closed
3 months ago
0
levenberg is not working properly
#194
lmoffatt
closed
3 months ago
4
store statistics of thermo jumps in levenberg algorithm
#193
lmoffatt
opened
6 months ago
0
bug in thermo jump that manifest with high number of threads
#192
lmoffatt
closed
6 months ago
1
make functionTable non_const reference
#191
lmoffatt
opened
6 months ago
0
remove old Models
#190
lmoffatt
closed
6 months ago
0
remove deprecated cuevi implementation
#189
lmoffatt
closed
6 months ago
1
remove old table function implementation
#188
lmoffatt
closed
6 months ago
0
Compilation is slow, remove unused code.
#187
lmoffatt
closed
6 months ago
1
sort_by_eigenvalue was giving wrong results
#186
lmoffatt
closed
6 months ago
1
implement a levenberg using finite difference
#185
lmoffatt
closed
3 months ago
1
run evindence_levenberg_data in tupac
#184
lmoffatt
closed
3 months ago
0
solve bug in calc_Qdt_taylor
#183
lmoffatt
closed
6 months ago
0
parameters to_value returns Maybe_error
#182
lmoffatt
closed
3 months ago
1
implement an adaptive step for levenberg lambdas
#181
lmoffatt
closed
3 months ago
1
restore derivative_test for macror likelihood
#180
lmoffatt
closed
6 months ago
1
refactor Parameters classes removing the unnecessary Id
#179
lmoffatt
closed
3 months ago
0
memoiza_all_values needs a generic parameters
#178
lmoffatt
closed
3 months ago
1
idealization is wrong
#177
lmoffatt
closed
3 months ago
0
avoid nan logLikelihood in macror
#176
lmoffatt
closed
3 months ago
2
implement an adaptive step for emcee algorithm
#175
lmoffatt
opened
7 months ago
0
implement a function that makes a model taking a model and a parameters transformation model
#174
lmoffatt
opened
7 months ago
0
implement scheme 12 13 14 15
#173
lmoffatt
closed
7 months ago
0
optimize the number of cores for each scheme
#172
lmoffatt
closed
7 months ago
0
plan the final runs
#171
lmoffatt
closed
7 months ago
1
change the priors of Moffatt Hume schemes from an informed to an agnostic one
#170
lmoffatt
closed
7 months ago
2
design the experiments
#169
lmoffatt
closed
7 months ago
0
run allosteric models in tupac
#168
lmoffatt
closed
7 months ago
1
refactor Model so it includes the getParamters from Q0 Qa g function
#167
lmoffatt
closed
7 months ago
0
recover conductance parameters in equilibrium kind.
#166
lmoffatt
closed
7 months ago
5
obtain conductance parameters from the g vector
#165
lmoffatt
closed
7 months ago
0
add a function to provide an state_count indexed access of Q
#164
lmoffatt
opened
7 months ago
0
recover the parameters from the Q0,Q1,g with the conformational states
#163
lmoffatt
closed
7 months ago
0
Discuss how to build a model from the command line
#162
lmoffatt
opened
7 months ago
0
Discuss the general architecture of an static rstan-like macro_dr
#161
lmoffatt
opened
7 months ago
0
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