lmrodriguezr enveomics issues

lmrodriguezr / enveomics

Scripts and libraries for Environmental Genomics

http://enve-omics.ce.gatech.edu/enveomics

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issues

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ani.rb gz support

#51 jianshu93 opened 1 year ago
0
add usearch -ublast option for finding best hits

#50 jianshu93 opened 3 years ago
0
BLAST mapping output

#49 TlaskalV closed 3 years ago
1
Enveomics::UnimplementedError

#48 dot4822 opened 3 years ago
1
Fix #46

#47 AleMadLei closed 4 years ago
2
/Scripts/SRA.download.bash curl fails with no content when trying to download data

#46 AleMadLei closed 4 years ago
1
Anir

#45 lmrodriguezr closed 4 years ago
0
ani.rb Intermediate files

#44 luisafmc opened 4 years ago
0
LazyLoad has been ignored since 2.14.0, use LazyData instead.

#43 xrobin closed 5 years ago
0
Migrate R documentation format to Roxygen2.

#42 tkiryuti closed 5 years ago
0
Convert utils.R to Roxygen2 format

#41 tkiryuti closed 5 years ago
0
Inlinedocs deprecated

#40 lmrodriguezr opened 5 years ago
0
Suggestion for ogs.mcl.rb

#39 lhor opened 5 years ago
0
Example unus-genome-phylogeny.bash has issues with tagging

#38 lmrodriguezr opened 5 years ago
0
Selecting duplicated ess genes in HMM.essential.rb

#37 lhor opened 6 years ago
0
Error in validObject while playing with the test files

#36 housw closed 6 years ago
2
AAI using MAGs

#35 blancaverag opened 6 years ago
0
Aln.convert.pl: XMFA -> FastA incomplete output

#34 yseif closed 4 years ago
5
Recplot2 is taking longer than expected

#33 lmrodriguezr opened 6 years ago
0
Coordinates in enve.recplot2.extractWindows are wrong

#32 lmrodriguezr opened 6 years ago
0
rbm.rb doesn't support -p blat

#31 lmrodriguezr opened 6 years ago
0
BlastTab.recplot2.R should allow no-peaks

#30 lmrodriguezr closed 6 years ago
0
Documentation website seems to be down

#29 ilnamkang opened 6 years ago
6
SRA.download.bash only supports md5sum

#28 lmrodriguezr closed 6 years ago
1
full blast+ output for ani.rb

#27 geboro opened 7 years ago
1
ani.rb should discard ambiguous fragments

#26 lmrodriguezr opened 7 years ago
0
aai-matrix is really slow

#25 sbridel opened 7 years ago
0
Mulithreading aai

#24 sbridel closed 7 years ago
2
ogs.annotate.rb problem

#23 blancaverag opened 7 years ago
2
Support acc.ver for ani.rb and aai.rb

#22 lmrodriguezr closed 7 years ago
0
AAI stalls when input is nucleotides

#21 lmrodriguezr closed 7 years ago
0
syntax error

#20 adalgarno closed 7 years ago
5
enveomics.R auto install

#19 cpadilla7 closed 8 years ago
1
JPlace.to_iToL.rb not compatible with iToL v3.0

#18 lmrodriguezr closed 8 years ago
0
Compress essential.hmm

#17 lmrodriguezr closed 8 years ago
1
Test ticket from Code Climate

#16 lmrodriguezr closed 8 years ago
0
FastA.interpose.pl inaccessible option

#15 lmrodriguezr closed 6 years ago
0
Add examples

#14 lmrodriguezr closed 8 years ago
0
HMMsearch.extractIds.rb incompatible with HMMER 3.1b2

#13 lhor closed 8 years ago
1
Auto-include :requires per language

#12 lmrodriguezr closed 8 years ago
0
Include :suggests in manifest.json tasks

#11 lmrodriguezr opened 8 years ago
0
:multiple_sep silently ignored

#10 lmrodriguezr closed 8 years ago
0
Augment manifest.json with :see_also

#9 lmrodriguezr closed 8 years ago
0
RScripts to interface enveomics.R

#8 lmrodriguezr closed 7 years ago
1
Semantics not included

#7 yoyohashao opened 9 years ago
0
Update

#6 lhor closed 9 years ago
0
Create FastA.SelecLength.pl

#5 lhor closed 9 years ago
0
BlastTab.kegg_pep2path_rest.pl: Abundant emergency downloads

#4 lmrodriguezr closed 11 years ago
0
BlastTab.sumPerHit.pl: Broader scope

#3 lmrodriguezr closed 11 years ago
0
BlastTab.recplot.R: inefficient gradient

#2 lmrodriguezr closed 9 years ago
1