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loosolab
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TF-COMB
Transcription Factor Co-Occurrence using Market Basket analysis
https://tf-comb.readthedocs.io
MIT License
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DiffCombObj().plot_heatmap does not pass kwargs to tfcomb.plotting.heatmap
#84
rwiegan
opened
2 months ago
0
import graphviz
#83
pavelToman
opened
5 months ago
0
77 error at market basket step
#82
vheger
closed
9 months ago
0
80 unexpected keyword argument max distance
#81
vheger
closed
9 months ago
0
Unexpected keyword argument 'max_distance'
#80
ancient-learner
opened
9 months ago
1
pairMap chromosome naming error
#78
hschult
closed
9 months ago
0
Error at market_basket step
#77
ancient-learner
opened
9 months ago
2
What does co-occurrence mean based on cosine and z-scores?
#76
Rajashree93
opened
9 months ago
2
`TFBSpairList.pairMap` function chromosome naming issue
#75
Myrtle-bio
closed
9 months ago
1
Please kindly explain this figure
#74
Rajashree93
closed
8 months ago
3
FloatingPointError in select_significant_rules()
#73
Myrtle-bio
opened
11 months ago
1
Details about subsetting TF-TF co-occurring pairs
#72
Myrtle-bio
closed
11 months ago
2
Version 1.1
#71
msbentsen
closed
1 year ago
0
Installation using pip install .
#70
ybaeus
closed
9 months ago
2
Kernal crashing at get_pair_locations
#69
annrosebright
opened
1 year ago
3
For CUT&RUN data
#68
ybaeus
opened
1 year ago
9
Z score
#67
Rajashree93
closed
11 months ago
7
Plot footprints
#66
Rajashree93
closed
11 months ago
2
Annotations
#65
Rajashree93
closed
11 months ago
3
Meme_Format Motif Input
#64
KaltenbacherT
closed
1 year ago
2
Annotation
#63
Rajashree93
closed
11 months ago
2
AttributeError: 'OneMotif' object has no attribute 'get_pssmm'
#62
VenkateshLab
opened
1 year ago
5
Issue while installing TF-comb
#61
VenkateshLab
closed
1 year ago
4
No image output on remote sever.
#60
Rajashree93
closed
11 months ago
3
Fixes #55 floating-point error handling
#59
hschult
closed
1 year ago
1
Interpreting the biological context of PairMap, PairTrack, PairTrackAnimation and PairLines
#58
archieandrews10
opened
1 year ago
1
Kde plot not working [distObj]
#57
vheger
opened
1 year ago
0
Fix for stranded plotting error
#56
msbentsen
closed
1 year ago
1
TFcomb changes numpy error handling
#55
hschult
closed
1 year ago
4
Unable to plot distances for stranded TFBS
#54
msbentsen
closed
1 year ago
1
Adjust verbosity of external modules
#53
hschult
opened
1 year ago
0
Addition of pyproject.toml -> 1.0.3
#52
msbentsen
closed
1 year ago
0
1.0.2 integration
#51
vheger
closed
1 year ago
1
Unable to see gene_id column in annotated output
#50
archieandrews10
closed
1 year ago
4
InputError: Region is out of bounds in the given genome
#49
GudaLab
closed
1 year ago
2
How to get all TF-TF pairs' location
#48
hcph
opened
1 year ago
2
AttributeError: module 'matplotlib' has no attribute '_version_'
#47
hcph
closed
1 year ago
3
No releases yet?
#46
sassy-crick
closed
2 years ago
3
methods read the docs
#45
vheger
closed
2 years ago
0
Zscore
#44
hschult
closed
2 years ago
1
plotting tables bugfix
#43
hschult
closed
2 years ago
1
motif position line not displayed correctly in TFBSPairList.pairMap()
#42
vheger
closed
2 years ago
4
pairMap
#41
hschult
closed
2 years ago
1
Dot fix
#40
hschult
closed
2 years ago
1
UnpicklingError for loading of CombObj
#39
oKoch
closed
2 years ago
2
TFBSPairList extension
#38
hschult
closed
2 years ago
9
Floating Point Error in
#37
oKoch
closed
2 years ago
2
Distances fix
#36
msbentsen
closed
2 years ago
1
Feature/save import diffcombobj
#35
oKoch
closed
2 years ago
1
median produces error in analyse_distances
#34
vheger
closed
2 years ago
2
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