loosolab jlu-bda-2020 issues

loosolab / jlu-bda-2020

Code repository for the JLU practical in Biodatenanalyse in winter 2020/2021

MIT License

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Publish first stable release

#54 JonnyCodewalker closed 3 years ago
0
Normalization error

#53 hschult closed 3 years ago
2
Exception: there is no data for your entered combination of genome, biosource and transcription factor

#52 hschult closed 3 years ago
3
ValueError: Expected 2D array, got 1D array instead

#51 rwiegan closed 3 years ago
1
No results displayed

#50 rwiegan opened 3 years ago
14
Visualization error

#49 hschult closed 3 years ago
2
Forwarding port denied

#48 rwiegan opened 3 years ago
0
Plot pauses pipeline

#47 hschult closed 3 years ago
0
Can not save plots due to file name length

#46 hschult closed 3 years ago
1
Downloading all Chr but only one was asked for

#45 rwiegan closed 3 years ago
8
Skip already normalized files

#44 hschult closed 3 years ago
4
Error when running pipeline in background

#43 hschult closed 3 years ago
1
Missing dependency

#42 hschult closed 3 years ago
1
TypeError: __init__() takes 8 positional arguments but 11 were given

#41 rwiegan closed 3 years ago
1
missing pickle file

#40 hschult closed 3 years ago
6
UnboundLocalError: local variable 'chromosomes' referenced before assignment

#39 rwiegan closed 3 years ago
1
conversion and normalization problems

#38 hschult closed 3 years ago
1
Analysis impossible without internet

#37 hschult closed 3 years ago
1
Download progress

#36 hschult closed 3 years ago
2
TypeError: 'NoneType' object is not subscriptable

#35 rwiegan closed 3 years ago
1
Exception: csv.r could not create CSV

#34 rwiegan closed 3 years ago
1
Redo Analysis: Segmentation Fault

#33 rwiegan closed 3 years ago
1
tf_analyzer default parameter

#32 hschult closed 3 years ago
4
-c choices

#31 rwiegan closed 3 years ago
3
Example Case: parameter is not accepted.

#30 rwiegan closed 3 years ago
1
Memory fix

#29 msbentsen closed 3 years ago
0
Wg1 block3

#28 JonnyCodewalker closed 3 years ago
0
Wg1 block2

#27 JonnyCodewalker closed 3 years ago
0
Wg2 dev

#26 JonnyCodewalker closed 3 years ago
0
Wg1 main

#25 JonnyCodewalker closed 3 years ago
0
Block1

#24 JonnyCodewalker closed 3 years ago
0
Wg1 block3

#23 JonnyCodewalker closed 3 years ago
0
Wg1 block2

#22 JonnyCodewalker closed 3 years ago
0
Allow user to pick chromosomes for each genome

#21 fctsfrmspc closed 3 years ago
1
CSV must contain all existing files for all available chromosomes

#20 fctsfrmspc closed 3 years ago
0
wg1_wrapper needs to ensure proper folderstructure

#19 JonnyCodewalker closed 3 years ago
0
Input to activator/repressor prediction

#18 msbentsen closed 3 years ago
1
Clean up of scripts

#17 msbentsen closed 3 years ago
2
Hardcoded options in score.py

#16 msbentsen closed 3 years ago
3
Wg1 block3

#15 JonnyCodewalker closed 3 years ago
0
Block1

#14 JonnyCodewalker closed 3 years ago
0
Wg1 block2

#13 JonnyCodewalker closed 3 years ago
0
block 1: exclude broadPeak ChiP files

#12 fctsfrmspc closed 3 years ago
1
block 2: required R packages

#11 fctsfrmspc closed 3 years ago
0
Validate Tools permissions

#10 JonnyCodewalker closed 3 years ago
0
Normalize data

#9 kmlr81 closed 3 years ago
1
Prep for normalizing data

#8 kmlr81 closed 3 years ago
1
Merge forward/reverse reads

#7 kmlr81 closed 3 years ago
11
Working Group 1 block 1: deepblue_list_epigenetic_marks does not work as expected

#6 fctsfrmspc closed 3 years ago
1
Working Group 1 block 3 Meta issue

#5 kmlr81 closed 3 years ago
0