issues
search
lowe-lab-ucl
/
arboretum
Track and lineage visualization with btrack and Napari :evergreen_tree:
MIT License
43
stars
11
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Improve lineage tree layout for conditions where multiple children arise from a division event.
#107
lupinthief
opened
2 months ago
2
Added default factory to numpy color creation
#106
JoOkuma
closed
11 months ago
4
Fusion events
#105
akas0018
opened
1 year ago
1
Update README.md with new video
#104
quantumjot
closed
1 year ago
1
Fix gui width
#103
quantumjot
closed
1 year ago
1
Plugin documentation
#102
marabuuu
opened
1 year ago
1
Fix coverage
#101
paddyroddy
closed
1 year ago
2
Code coverage report looks incorrect
#100
quantumjot
closed
1 year ago
0
Fix flipped y-axis in SVG writer
#99
quantumjot
closed
1 year ago
2
Fix various URLs
#98
paddyroddy
closed
1 year ago
1
Make a new video for the README/hub
#97
quantumjot
closed
1 year ago
0
Change name of napari hub item to `arboretum` not `napari-arboretum`
#96
paddyroddy
closed
1 year ago
1
Add simple SVG writer and GUI button to export current tree
#95
quantumjot
closed
1 year ago
1
Experimental tree visualization with merges
#94
quantumjot
closed
1 year ago
2
Fix error when track data is missing properties
#93
quantumjot
closed
1 year ago
1
Rename `napari` folder
#92
paddyroddy
closed
1 year ago
1
lineage tree ignores multiple parents
#91
will-moore
closed
1 year ago
7
track properties requirements
#90
quantumjot
closed
1 year ago
0
Port files over to `pyproject.toml`
#89
paddyroddy
closed
1 year ago
2
Remove `setup.cfg` in favour of `pyproject.toml`
#88
paddyroddy
closed
1 year ago
0
Test project board attempt 3
#87
paddyroddy
closed
1 year ago
0
Test project board again
#86
paddyroddy
closed
1 year ago
0
Test project board works
#85
paddyroddy
closed
1 year ago
0
Add linting and run ruff
#84
paddyroddy
closed
1 year ago
5
Fix known tox issue
#83
paddyroddy
closed
1 year ago
1
Add issues automatically to project board
#82
paddyroddy
closed
1 year ago
0
Save Tree feature and Nodes labeling
#81
Ciro1990
closed
1 year ago
3
Fix import dependencies
#80
quantumjot
closed
1 year ago
0
Import dependencies
#79
goanpeca
closed
1 year ago
2
Increase rendering performance
#78
quantumjot
closed
2 years ago
4
Update annotation positioning and mouse events
#77
quantumjot
closed
2 years ago
1
Long arboretum use crashes the kernel
#76
KristinaUlicna
closed
1 year ago
1
Lineage Tree Annotation Offset
#75
KristinaUlicna
closed
2 years ago
3
Fix time line on >second cell selection
#74
dstansby
closed
2 years ago
2
Vertical time line disappears on second cell selection
#73
dstansby
closed
2 years ago
0
Use re-usable actions for testing
#72
dstansby
closed
2 years ago
3
Modernise packaging
#71
dstansby
closed
2 years ago
1
Remove unused colormaps file
#70
dstansby
closed
2 years ago
2
Add title to widget indicating selected cell
#69
dstansby
closed
2 years ago
3
Error drawing tree for id#21 in example data
#68
dstansby
closed
2 years ago
2
Minor cleanups to property plotter
#67
dstansby
closed
2 years ago
2
Add more than one branch to the property plotter
#66
dstansby
opened
2 years ago
0
Make 1D property plotter colours match tree colours
#65
dstansby
opened
2 years ago
0
Drop Python 3.7 support
#64
dstansby
closed
2 years ago
3
Distinguish between mouse click, drag and other events
#63
quantumjot
closed
2 years ago
1
Make it obvious which cell is selected in main napari window
#62
dstansby
opened
2 years ago
1
Add title to tree visualisation
#61
dstansby
closed
2 years ago
0
Add 1D property plotter
#60
dstansby
closed
2 years ago
9
rename `.napari` to `.napari-hub`
#59
quantumjot
closed
1 year ago
0
Add some padding around tree
#58
dstansby
closed
2 years ago
1
Next