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lowe-lab-ucl
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arboretum
Track and lineage visualization with btrack and Napari :evergreen_tree:
MIT License
45
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11
forks
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Improve lineage tree layout for conditions where multiple children arise from a division event.
#107
lupinthief
opened
5 months ago
2
Added default factory to numpy color creation
#106
JoOkuma
closed
1 year ago
4
Fusion events
#105
akas0018
opened
1 year ago
1
Update README.md with new video
#104
quantumjot
closed
1 year ago
1
Fix gui width
#103
quantumjot
closed
1 year ago
1
Plugin documentation
#102
marabuuu
opened
1 year ago
1
Fix coverage
#101
paddyroddy
closed
1 year ago
2
Code coverage report looks incorrect
#100
quantumjot
closed
1 year ago
0
Fix flipped y-axis in SVG writer
#99
quantumjot
closed
1 year ago
2
Fix various URLs
#98
paddyroddy
closed
1 year ago
1
Make a new video for the README/hub
#97
quantumjot
closed
1 year ago
0
Change name of napari hub item to `arboretum` not `napari-arboretum`
#96
paddyroddy
closed
1 year ago
1
Add simple SVG writer and GUI button to export current tree
#95
quantumjot
closed
1 year ago
1
Experimental tree visualization with merges
#94
quantumjot
closed
1 year ago
2
Fix error when track data is missing properties
#93
quantumjot
closed
1 year ago
1
Rename `napari` folder
#92
paddyroddy
closed
1 year ago
1
lineage tree ignores multiple parents
#91
will-moore
closed
1 year ago
7
track properties requirements
#90
quantumjot
closed
1 year ago
0
Port files over to `pyproject.toml`
#89
paddyroddy
closed
1 year ago
2
Remove `setup.cfg` in favour of `pyproject.toml`
#88
paddyroddy
closed
1 year ago
0
Test project board attempt 3
#87
paddyroddy
closed
1 year ago
0
Test project board again
#86
paddyroddy
closed
1 year ago
0
Test project board works
#85
paddyroddy
closed
1 year ago
0
Add linting and run ruff
#84
paddyroddy
closed
1 year ago
5
Fix known tox issue
#83
paddyroddy
closed
1 year ago
1
Add issues automatically to project board
#82
paddyroddy
closed
1 year ago
0
Save Tree feature and Nodes labeling
#81
Ciro1990
closed
1 year ago
3
Fix import dependencies
#80
quantumjot
closed
2 years ago
0
Import dependencies
#79
goanpeca
closed
2 years ago
2
Increase rendering performance
#78
quantumjot
closed
2 years ago
4
Update annotation positioning and mouse events
#77
quantumjot
closed
2 years ago
1
Long arboretum use crashes the kernel
#76
KristinaUlicna
closed
1 year ago
1
Lineage Tree Annotation Offset
#75
KristinaUlicna
closed
2 years ago
3
Fix time line on >second cell selection
#74
dstansby
closed
2 years ago
2
Vertical time line disappears on second cell selection
#73
dstansby
closed
2 years ago
0
Use re-usable actions for testing
#72
dstansby
closed
2 years ago
3
Modernise packaging
#71
dstansby
closed
2 years ago
1
Remove unused colormaps file
#70
dstansby
closed
2 years ago
2
Add title to widget indicating selected cell
#69
dstansby
closed
2 years ago
3
Error drawing tree for id#21 in example data
#68
dstansby
closed
2 years ago
2
Minor cleanups to property plotter
#67
dstansby
closed
2 years ago
2
Add more than one branch to the property plotter
#66
dstansby
opened
2 years ago
0
Make 1D property plotter colours match tree colours
#65
dstansby
opened
2 years ago
0
Drop Python 3.7 support
#64
dstansby
closed
2 years ago
3
Distinguish between mouse click, drag and other events
#63
quantumjot
closed
2 years ago
1
Make it obvious which cell is selected in main napari window
#62
dstansby
opened
2 years ago
1
Add title to tree visualisation
#61
dstansby
closed
2 years ago
0
Add 1D property plotter
#60
dstansby
closed
2 years ago
9
rename `.napari` to `.napari-hub`
#59
quantumjot
closed
1 year ago
0
Add some padding around tree
#58
dstansby
closed
2 years ago
1
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