search

lpantano / DEGreport

Create a cromphensive report of DEG list coming from any analysis of RNAseq data
http://lpantano.github.io/DEGreport/
MIT License
23 stars 16 forks source link

error message #30

Open NextGenBioinformatics opened 4 years ago

NextGenBioinformatics commented 4 years ago

Hi there,

I am using degPatterns() from DEGreport package to do the gene clustering analysis but encounter an error message below:

Large number of genes given. Please,make sure is not an error. NormallyOnly DE genes are useful for this function . Error in lower.to.upper.tri.inds(n) : 'n' must be >= 2 Calls: degPatterns -> .make_clusters -> diana -> lower.to.upper.tri.inds Execution halted

Many thanks,

Tom

lpantano commented 4 years ago

Hi,

thank you for reporting this issue. Can you tell me what version are you using?

As well, how many genes are you input? More than 3K could make things very slow and break.

If you can save the objects you are using for the call and sending to me I can try to reproduce and solve the issue.

Thanks!