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lpantano / DEGreport

Create a cromphensive report of DEG list coming from any analysis of RNAseq data
http://lpantano.github.io/DEGreport/
MIT License
23 stars 16 forks source link
bioconductor differential-expression qc r report rna-seq smallrna

readme

DEGreport

Build status Project Status: Active - The project has reached a stable, usable state and is being actively developed. BioC Downloads coverage Support this project by running your production jobs at BatchX

QCs, figures and analyses after differential expression with DESeq2 or other similar tool.

Pantano L (2017). DEGreport: Report of DEG analysis. R package version 1.13.8.

DOI: 10.18129/B9.bioc.DEGreport

Installation

This is an R package.

Bioconductor stable version

if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install("DEGreport")

Bioconductor latest version

devtools::install_git("https://git@git.bioconductor.org/packages/DEGreport")

devtools unstable version

install.packages("devtools")
devtools::install_github("lpantano/DEGreport")

Load the package and learn what to do:

browseVignettes("DEGreport")

Here is the last devel vignette.