LTER Synthesis working group: Ecological Metagenome-derived Reference Genomes and Traits (EMERGENT)

PIs:

• Jeffrey Blanchard
• Janet Jansson
• Jorge Rodrigues
• Lee Stanish
• Margaret O’Brien (Archival Liaison)
• Jason McDermott (Technical Liaison)

Project Summary

https://lternet.edu/current-working-groups/

Info for Participants

https://www.nceas.ucsb.edu/projects/12815

Github Repositories

General repo: https://github.com/lter/lterwg-emergent

Website repo: https://github.com/lter/lterwg-emergent-website

Shiny repo: https://github.com/lter/lterwg-emergent-shiny

Road map to this Repository (update this section as needed)

code folder: for sharing scripts

Guidelines for sharing scripts

• All code should include sufficient annotation and documentation so that other users can understand and run the scripts.
• Write your scripts such that other users can run the code without modifications (except for changing file paths). Scripts that can only be run by users with a specific operating system or software should be clearly denoted.
• Include an attribution header to your scripts. It's easy to create a standard code snippet that you can add to all of your scripts, see these useful instructions at this blog post: https://timfarewell.co.uk/my-r-script-header-template/

Here is an example header code snippet: ##############################################################################################

' @title Give your script a name that describes its purpose

' @author

' Lee Stanish \email{lstanish@gmail.com } \cr

' @description Add description. Ex. Post-processing script to look more closely at data differences for soil moisture

' @return Describe what it returns. Ex. NEON Soil Physical Properties downloaded as .csv file and pdf plots of soil edaphic data by site

' changelog and author contributions / copyrights

' Lee Stanish (20XX-MM-DD)

' original creation

##############################################################################################