magnusdv pedtools issues

magnusdv / pedtools

Tools for working with pedigrees in R

GNU General Public License v3.0

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issues

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Problem with differing data types of ID-vecors in `ped()`

#52 deepchocolate closed 2 months ago
1
`transferMarkers()` does not work as expected if `from` is a list

#51 bragef closed 5 months ago
2
Inaccurate error message in `addSon()`/`addDaughter()`

#50 chrcarrizosa closed 5 months ago
1
`setAfreq()` should update mutation models

#49 magnusdv closed 10 months ago
0
Adding children across components

#48 magnusdv closed 5 months ago
0
Rewrite `plot.list()`; expand to any list of pure ped objects

#47 magnusdv closed 11 months ago
0
componentwise `nMarkers()`

#46 magnusdv closed 11 months ago
0
`randomPed()` error

#45 magnusdv closed 1 year ago
1
Definition of generations

#44 zachariae closed 1 year ago
2
`print.ped()` should return the pedigree (not the data frame) invisibly

#43 magnusdv closed 1 year ago
0
`randomPed()` error

#42 chrcarrizosa closed 1 year ago
1
Plot one marker

#41 thoree closed 1 year ago
2
`swapSex()` messes up X-chromosomal markers

#40 magnusdv closed 1 year ago
0
fill argument for `plot.ped()`

#39 chrcarrizosa closed 1 year ago
1
Refactor plot function

#38 magnusdv closed 1 year ago
0
New errors breaking (marriage) loops

#37 zachariae closed 2 years ago
4
consolidate function - feature request

#36 thoree opened 2 years ago
0
`distributeMarkers` and `dist` argument

#35 thoree closed 1 month ago
1
distributeMarkers and NA

#34 thoree closed 2 years ago
1
`addMarker()` ped list fail

#32 magnusdv closed 2 years ago
0
Disconnected random pedigrees

#31 magnusdv closed 1 year ago
0
Malformed random pedigrees with selfing

#30 magnusdv closed 1 year ago
2
`readPed()` fails when ID labels have spaces

#29 magnusdv closed 2 years ago
0
Check for duplicated allele names?

#28 thoree closed 4 years ago
1
Markers with same names allowed

#27 thoree closed 4 years ago
1
Feature requests for `transferMarkers`

#26 thoree closed 3 years ago
1
Failed to install 'pedtools' from GitHub

#25 thoree closed 4 years ago
2
implementation of missing parents

#24 larahurban closed 4 years ago
5
Release pedtools 0.9.0

#23 magnusdv closed 4 years ago
0
Problem installing with `build_vignettes = TRUE`

#22 thoree closed 5 years ago
2
`setFrequencyDatabase` and marker name

#21 thoree closed 4 years ago
6
`custom` mutation model

#20 thoree closed 5 years ago
2
Changing mutation model

#19 thoree closed 5 years ago
3
Implement `as.data.frame()` and `writePed()` for lists

#18 magnusdv closed 4 years ago
0
Utility pedigree loading functions

#17 knifecake closed 5 years ago
0
Some functions not exported?

#16 thoree closed 5 years ago
1
request for getSex for list of pedigrees and singletons

#15 thoree closed 5 years ago
1
`getAlleles()` output and marker names

#14 thoree closed 5 years ago
1
sorted output from getAlleles

#13 thoree closed 5 years ago
1
getAlleles for X

#12 thoree closed 5 years ago
2
Functions for manipulating the allele matrix

#11 magnusdv closed 5 years ago
1
`transferMarkers()` doesn't catch duplicated IDs

#10 magnusdv closed 5 years ago
0
transferMarkers changing too much?

#9 thoree closed 5 years ago
5
`addParents()` should add parents *before* the child

#8 magnusdv closed 5 years ago
0
plotPedList not run example

#7 thoree closed 5 years ago
1
linearPed

#6 thoree closed 6 years ago
1
posCm

#5 thoree closed 5 years ago
1
validate_ped

#4 thoree closed 6 years ago
0
Unplottable pedigrees

#3 magnusdv closed 1 year ago
2
Duplicated individuals

#2 thoree closed 6 years ago
3