mailund stralg issues - Githubissues

mailund / stralg

Small library of string algorithms

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Testing sa, isa, lcp. I test was created my_suffix_array_test.cpp. To…

#111 lrodriguez-crypto closed 1 year ago
0
Saving one iteration of the while loop

#110 rayhan-rahman opened 3 years ago
1
SA-IS algorithm

#109 mailund closed 4 years ago
2
Non recursive lcp traverse

#108 mailund closed 4 years ago
2
With large trees, lcp_traverse crashes

#107 mailund closed 4 years ago
0
Suffix trees children arrays

#106 mailund closed 4 years ago
1
Exact and BWT are no longer giving the same result with test_mappers_exact.sh

#105 mailund opened 4 years ago
0
Implement Farach's suffix tree algorithm

#104 mailund opened 5 years ago
0
Rewamp approx search with bwt

#103 mailund closed 5 years ago
1
Get rid of SA pointers in BWT structure

#102 mailund closed 5 years ago
1
Memory pool for suffix tree nodes

#101 mailund closed 5 years ago
3
Always remap

#100 mailund opened 5 years ago
0
Get rid of generic data structures

#99 mailund closed 5 years ago
0
the naive algorithm fails on simple string

#98 mailund closed 5 years ago
1
Refactor lcp suffix tree construction

#97 mailund closed 5 years ago
2
Refactor naive suffix tree construction

#96 mailund closed 5 years ago
2
Parametrise the index type

#95 mailund closed 5 years ago
0
Change suffix tree indices to pointers

#94 mailund closed 5 years ago
0
Doesn't include flanking insertions in the beginning or end of strings

#93 mailund closed 4 years ago
1
iter tests

#92 mailund closed 5 years ago
0
Update bioinformatics tests

#91 mailund closed 5 years ago
0
Suffix array binary search pattern matching

#90 mailund closed 5 years ago
2
Bwt serialisation

#89 mailund closed 5 years ago
3
Change index sizes to uin32_t

#88 mailund closed 5 years ago
2
Test matching with the lower-bound SA search

#87 mailund closed 5 years ago
1
Test the match functions with remapped strings

#86 mailund opened 5 years ago
0
Remove double loops for approx matching

#85 mailund closed 5 years ago
7
Leading and trailing deletions removed from approximative matches

#84 mailund closed 5 years ago
3
Simplify suffix tree's approximative matching flanking deletions

#83 mailund closed 5 years ago
1
Remap validation

#82 mailund closed 5 years ago
2
Split unit tests in fast and slow

#81 mailund opened 5 years ago
0
Add tests for remapping with letters outside the alphabet.

#80 mailund closed 5 years ago
0
There is some weirdness with BWT approx matching for matches at the end of the string.

#79 mailund closed 5 years ago
2
When reporting approximative matches, do not include matches that starts or ends in deletions

#78 mailund closed 5 years ago
1
Document the API

#77 mailund opened 5 years ago
0
TODO updates by @imdone

#76 mailund closed 5 years ago
0
TODO updates by @imdone

#75 mailund closed 5 years ago
0
there is no reason to rebuild the suffix tree,

#74 mailund closed 5 years ago
0
add bwt test

#73 mailund closed 5 years ago
0
make this double loop a single iterator in bwt

#72 mailund closed 5 years ago
0
add lower bound search for suffix array

#71 mailund closed 5 years ago
0
make all the matches work with the remapped string

#70 mailund closed 5 years ago
0
simplify

#69 mailund closed 5 years ago
0
add bwt test

#68 mailund closed 5 years ago
0
add lower bound sa search

#67 mailund closed 5 years ago
0
add searches using the lcp construction

#66 mailund closed 5 years ago
0
reverse cigar and matched string

#65 mailund closed 5 years ago
0
add lcp test

#64 mailund closed 5 years ago
0
implement this double loop as a single

#63 mailund closed 5 years ago
0
make all the matches work with the remapped string

#62 mailund closed 5 years ago
0