malhamdoosh EGSEA issues

malhamdoosh / EGSEA

This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.

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issues

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Error in dimnames(x) <- dn : length of 'dimnames' [2] not equal to array extent

#21 Chrisdoan9 closed 6 months ago
4
Is it possible to use pre-ranked gene lists in EGSEA?

#20 TiaGlia closed 6 months ago
1
Resolved BiocCheck warnings and errors for Bioconductor

#19 OliverVoogd closed 1 year ago
0
EGSEA::egsea - Parallelization issue and "Error in array(col.rgb[, i], dim(node.rgb)[3:1]) : negative length vectors are not allowed"

#18 nztao opened 1 year ago
1
Typo in man page for showSetByName

#17 jdrnevich opened 4 years ago
0
Fix selection of duplicate probe sets

#16 bnanes opened 4 years ago
0
One of the base methods failed on this dataset

#15 stemangiola opened 6 years ago
1
Error in initialize(value, ...): l'argomento "go_id" non è specificato e non ha un valore predefinito

#14 Francesco1993 opened 6 years ago
1
Integrating EGSEA plotSummary in Rmarkdown

#13 hariiyer16 opened 6 years ago
0
Dealing with 'NA' or absent entrezids for rownames in voom object

#12 s-canchi opened 6 years ago
0
Error when sort.by not pvals

#11 malhamdoosh opened 6 years ago
0
Error in Show Pathway

#10 mkrzak opened 6 years ago
0
Substitute print by message

#9 llrs opened 6 years ago
0
Feature Request: topSets enhancements

#8 jrthompson54 opened 6 years ago
0
Feature Request: Improvements to graphic handling

#7 jrthompson54 opened 6 years ago
0
Feature Request: More flexible data input

#6 jrthompson54 opened 6 years ago
0
Conversion between the different ID annotations

#5 mPiyushkumar opened 7 years ago
0
defensive programming for buildIdx to avoid bad gene sets

#4 AMChalkie opened 7 years ago
0
Implement additional visualizations using joyplots

#3 malhamdoosh opened 7 years ago
0
Rename entrezIDs into geneIDs in egsea.ora

#2 malhamdoosh closed 7 years ago
0
egsea.ora fails when 'title' has spaces

#1 malhamdoosh closed 7 years ago
0