mamarjan gff3-pltools issues

mamarjan / gff3-pltools

A fast parallel GFF3 parser

MIT License

15 stars 5 forks source link

issues

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More refactoring wanted!

#75 lomereiter opened 11 years ago
1
gff3-filter throws exception when field can't be converted to int or float

#74 mamarjan closed 12 years ago
2
empty operand in filtering expression

#73 mamarjan opened 12 years ago
0
README's

#72 pjotrp closed 12 years ago
0
gff3-ffetch segfaults

#71 pjotrp closed 12 years ago
2
Make rake build the tools by default

#70 pjotrp opened 12 years ago
2
Include the tools in Galaxy

#69 mamarjan opened 12 years ago
1
Support for adding a header before the data when selecting columns

#68 mamarjan opened 12 years ago
0
Output in CSV instead of tab delimited columns

#67 mamarjan opened 12 years ago
0
refactor Record.append_to

#66 lomereiter opened 12 years ago
5
AttributeValue constructors

#65 lomereiter opened 12 years ago
1
GFF3 to GTF and vice versa

#64 mamarjan opened 12 years ago
1
Output only selected fields in a table format

#63 mamarjan closed 12 years ago
2
Improve README and docs

#62 mamarjan opened 12 years ago
1
A tool for sorting GFF3 files

#61 mamarjan opened 12 years ago
0
A tool for correctly grouping all records into features

#60 mamarjan closed 12 years ago
0
Improve validation speed

#59 mamarjan closed 12 years ago
2
Add support for "and" and "or" in filtering on the command line

#58 mamarjan closed 12 years ago
1
Filtering features

#57 mamarjan opened 12 years ago
0
Tool for grouping features and output them in JSON format

#56 mamarjan closed 12 years ago
0
JSON output

#55 mamarjan closed 12 years ago
2
Length of transcripts for filtering

#54 mamarjan closed 12 years ago
1
Numerical comparison for filtering

#53 mamarjan closed 12 years ago
1
GTF support

#52 mamarjan closed 12 years ago
2
GFF3 to JSON tool

#51 mamarjan closed 12 years ago
1
Records to represent pragmas and comments

#50 mamarjan closed 12 years ago
1
A new repository for the Ruby gem

#49 mamarjan closed 12 years ago
1
Add toString and recursiveToString for Feature

#48 mamarjan closed 12 years ago
0
A tool for sorting GFF3 files

#47 mamarjan opened 12 years ago
0
gff3-ffetch to pass FASTA data to output

#46 mamarjan closed 12 years ago
1
Windows binaries

#45 mamarjan opened 12 years ago
0
GDC support

#44 mamarjan closed 12 years ago
1
MAN pages for utilities

#43 mamarjan closed 12 years ago
1
A gem for rubygems.org

#42 mamarjan closed 12 years ago
2
Try re-implementing the FeatureCache using built-in associative arrays

#41 mamarjan opened 12 years ago
0
Docs

#40 mamarjan closed 12 years ago
1
Ruby interface for validation of GFF3 files

#39 mamarjan closed 12 years ago
1
Ruby interface for filtering GFF3 files

#38 mamarjan closed 12 years ago
0
& and , have special meaning in attributes field

#37 mamarjan closed 12 years ago
2
Packaging for Ubuntu 32 and 64 bit

#36 mamarjan closed 12 years ago
4
New name

#35 mamarjan closed 12 years ago
1
Basic GFF3 output in D

#34 mamarjan closed 12 years ago
2
count-features utility too slow

#33 mamarjan closed 12 years ago
1
Too many files starting with gff3

#32 mamarjan closed 12 years ago
0
Benchmark tool seg-fault

#31 mamarjan closed 12 years ago
12
replace_url_escaped_chars() too slow

#30 mamarjan closed 12 years ago
11
A utility for benchmarking the parser

#29 mamarjan closed 12 years ago
0
Mostly comments

#28 pjotrp closed 12 years ago
0
Move validation out into its own module

#27 pjotrp closed 12 years ago
1
Validation of record formatting should be lazy

#26 pjotrp closed 12 years ago
0