Table of Contents :toc_2:noexport:
[[#sentinel-3-s3-albedo-processing-pipeline][Sentinel-3 (S3) Albedo Processing Pipeline]]
- [[#fetch-s3-olci--slstr-products][Fetch S3 OLCI & SLSTR products]]
- [[#process-with-snap][Process with SNAP]]
- [[#mosaic][Mosaic]]
- [[#pysice][pySICE]]
- [[#outputs][Outputs]]
[[#debugging--testing][Debugging & Testing]]
[[#development-environment][Development Environment]]
- [[#bash][Bash]]
- [[#python][Python]]
- [[#parallel][Parallel]]
- [[#grass][GRASS]]
- [[#gpt][GPT]]
- [[#snap][SNAP]]
[[#misc-notes--code-snippets][Misc Notes & Code Snippets]]
- [[#generate-ice-mask][Generate ice mask]]
- [[#footprint][Footprint]]
Sentinel-3 (S3) Albedo Processing Pipeline

Fetch S3 OLCI & SLSTR products
Process OLCI & SLSTR using SNAP GPT
Process using pySICE
Build daily mosaic

The steps above are encapsulated in [[./S3_wrapper.sh]].

In more detail:

** Fetch S3 OLCI & SLSTR products

Download OLCI EFR and SLSTR RBT products for a specified day with [[./dhusget_wrapper.sh]].

** Process with SNAP

This step is a combination of running GPT on [[./S3.xml]] with [[./S3_proc.sh]].
Inputs: OLCI and SLSTR scenes
Outputs: A folder OLCI timestamp

** Mosaic

As implemented in [[./dm.sh]] and [[./dm.grass.sh]], for each day
- Combine all the files from to form a mosaic
- Mask out clouds, then...
- When scenes overlap, use minimum SZA

** pySICE

Run [[./sice.py]] passing in one of the folders generated in the previous step.

** Outputs | File Name | Description | Units | |-------------------------------+------------------------------------------------------------------------+-------------| | grain_diameter | | mm | | snow_specific_area | | mm | | ndsi | normalized difference snow index | | | ndbi | normalized difference blue ice index | | | auto_cloud | in development | | | sza | sun zenith angle | | | vza | viewing zenith angle | | | saa | sun azimuth angle | | | vaa | viewing azimuth angle | | | albedo_bb_planar_nir | near infrared broadband planar albedo | 700-2400 nm | | albedo_bb_planar_sw | shortwave broadband planar albedo | 300-2400 nm | | albedo_bb_planar_vis | visible broadband planar albedo | 300-700 nm | | albedo_bb_spherical_nir | near infrared broadband spherical albedo | 700-2400 nm | | albedo_bb_spherical_sw | shortwave broadband spherical albedo | 300-2400 nm | | albedo_bb_spherical_vis | visible broadband spherical albedo | 300-700 nm | | Oa01..21_reflectance | top of the atmosphere reflectance (OLCI bands 1 through 21) | | | rBRR_01..21 | bottom of the atmosphere surface reflectance (OLCI bands 1 through 21) | | | albedo_spectral_planar_01..21 | spectral planar albedo (OLCI bands 1 through 21) | | | diagnostic_retrieval | See next table. | |

| Diagnostic Code | Description | |-----------------+-----------------------------------------------------------------------------------------------| | 0 | clean snow | | 1 | polluted snow | | 6 | polluted snow for which r0 was calculated and not derived from observations | | 7 | polluted snow of calculated spherical albedo in bands 1 and 2 >0.98 reprocessed as clean snow | | 100 | sza<75, no retrival | | 102 | TOA reflectance at band 21 < 0.1, no retrieval | | 104 | grain_diameter < 0.1, no retrieval, potential cloud flag | | -n | impossible to solve polluted snow albedo equation at band n |

Debugging & Testing

Change the year and day for loops in [[./S3_wrapper.sh]] to one year and one day. E.g.

+BEGIN_SRC bash :results verbatim

for year in 2017; do # one year for doy in 227 180; do # two example days

loop contents

done done

+END_SRC

+RESULTS:

Development Environment :PROPERTIES: :header-args:bash+: :eval no-export :END:

This work is developed with the following software versions

** Bash

+BEGIN_SRC bash :results verbatim :exports both

bash --version

+END_SRC

+RESULTS:

: GNU bash, version 4.4.20(1)-release (x86_64-pc-linux-gnu) : Copyright (C) 2016 Free Software Foundation, Inc. : License GPLv3+: GNU GPL version 3 or later http://gnu.org/licenses/gpl.html : : This is free software; you are free to change and redistribute it. : There is NO WARRANTY, to the extent permitted by law.

** Python

Run the following using [[./SICE.yml]] in order to set up an identical Anaconda Python environment.

+BEGIN_SRC bash :results verbatim

conda env create -f SICE.yml

+END_SRC

And then run =conda activate SICE= to activate the SICE environment.

=ResolvePackageNotFound= error can be raised. In that case, run =conda env export --no-builds > environment.yml= instead.

** Parallel

+BEGIN_SRC bash :results verbatim :exports both

parallel --version

+END_SRC

+RESULTS:

+begin_example

GNU parallel 20161222 Copyright (C) 2007,2008,2009,2010,2011,2012,2013,2014,2015,2016 Ole Tange and Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later http://gnu.org/licenses/gpl.html This is free software: you are free to change and redistribute it. GNU parallel comes with no warranty.

Web site: http://www.gnu.org/software/parallel

When using programs that use GNU Parallel to process data for publication please cite as described in 'parallel --citation'.

+end_example

** GRASS

+BEGIN_SRC bash :results verbatim :exports both

grass --version 2>&1

+END_SRC

+RESULTS:

+begin_example

GRASS GIS 7.4.0

Geographic Resources Analysis Support System (GRASS) is Copyright, 1999-2018 by the GRASS Development Team, and licensed under terms of the GNU General Public License (GPL) version >=2.

This GRASS GIS 7.4.0 release is coordinated and produced by the GRASS Development Team with contributions from all over the world.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

+end_example

** GPT

+BEGIN_SRC sh :results verbatim :exports both

~/local/snap/bin/gpt --diag

+END_SRC

+RESULTS:

+begin_example

SNAP Release version 7.0 SNAP home: /home/kdm/local/snap/bin//.. SNAP debug: null SNAP log level: null Java home: /home/kdm/local/snap/jre Java version: 1.8.0_202 Processors: 8 Max memory: 18.7 GB Cache size: 1024.0 MB Tile parallelism: 8 Tile size: 512 x 512 pixels

To configure your gpt memory usage: Edit snap/bin/gpt.vmoptions

To configure your gpt cache size and parallelism: Edit .snap/etc/snap.properties or gpt -c ${cachesize-in-GB}G -q ${parallelism}

+end_example

** SNAP

Note: SNAP launches. Have to quit. Emacs spins. Press C-g. Then results appear.

+NAME: snap_versions

+BEGIN_SRC sh :results verbatim :exports code :eval yes

~/local/snap/bin/snap --nosplash --list --modules --refresh

+END_SRC

+NAME: snap_versions

+begin_example

Refreshing SNAP Community Extensions Refreshing SNAP Refreshing SNAP Extensions Code Name Version State

org.csa.rstb.rstb.op.polarimetric.tools 7.5.2 Enabled
org.esa.s2tbx.s2tbx.s2msi.reader 7.0.0 Enabled
org.esa.snap.snap.temporal.percentile 7.0.3 Enabled
org.netbeans.swing.plaf 1.41.1 Enabled
org.netbeans.modules.extexecution 1.48.1 Enabled
org.esa.snap.snap.unmix.ui 7.0.3 Enabled
org.netbeans.modules.options.api 1.45.1 Enabled
org.esa.snap.snap.pgx.reader 7.0.3 Enabled
org.openide.modules 7.48.1 Enabled
org.esa.s2tbx.s2tbx.forest.cover.change 7.0.0 Enabled
org.esa.snap.snap.smart.configurator.ui 7.0.3 Enabled
org.esa.s3tbx.s3tbx.landsat.reader 7.0.2 Enabled
org.esa.sen2coral.sen2coral.kit 1.0.0 Available org.openide.util.lookup 8.33.1 Enabled
org.esa.s2tbx.s2tbx.alosAV2.reader 7.0.0 Enabled
org.netbeans.modules.masterfs.nio2 1.15.1 Enabled
org.esa.s3tbx.s3tbx.sentinel3.reader 7.0.2 Enabled
org.esa.snap.snap.python 7.0.3 Enabled
org.esa.s2tbx.s2tbx.worldview2esa.reader 7.0.0 Enabled
org.esa.s1tbx.s1tbx.kit 7.0.2 Enabled
org.esa.s2tbx.s2tbx.gdal.reader 7.0.0 Enabled
org.netbeans.api.annotations.common 1.27.1 Enabled
org.esa.snap.snap.remote.execution.ui 7.0.3 Enabled
org.esa.snap.globcover.worldmap 7.0.3 Enabled
org.netbeans.core.output2 1.41.1 Enabled
org.esa.snap.snap.core 7.0.3 Enabled
org.esa.snap.snap.branding 7.0.3 Enabled
org.netbeans.core.netigso 1.31.1 Enabled
org.esa.s3tbx.s3tbx.spot.vgt.reader 7.0.2 Enabled
org.netbeans.libs.jna.platform 1.14.1 Enabled
org.esa.s3tbx.s3tbx.sentinel3.reader.ui 7.0.2 Enabled
org.esa.snap.snap.smart.configurator 7.0.3 Enabled
org.esa.s2tbx.s2tbx.otb.adapters.kit 7.0.0 Available org.esa.s2tbx.s2tbx.land.cover 7.0.0 Enabled
org.esa.snap.snap.statistics 7.0.3 Enabled
org.openide.execution 9.3.1 Enabled
org.esa.s3tbx.s3tbx.mphchl 7.0.2 Enabled
org.esa.s1tbx.s1tbx.commons 7.0.2 Enabled
org.esa.s3tbx.s3tbx.meris.l2auxdata 7.0.2 Enabled
org.esa.snap.idepix.probav 7.0.0 Available org.esa.snap.ceres.ui 7.0.3 Enabled
org.netbeans.spi.quicksearch 1.27.1 Enabled
org.openide.windows 6.75.1 Enabled
org.esa.s3tbx.s3tbx.o2a.harmonisation 7.0.2 Enabled
org.netbeans.modules.sampler 1.14.1 Enabled
org.netbeans.modules.autoupdate.ui 1.45.1 Enabled
org.esa.s3tbx.s3tbx.aatsr.sst.ui 7.0.2 Enabled
org.esa.snap.snap.collocation 7.0.3 Enabled
org.esa.s3tbx.s3tbx.olci.radiometry 7.0.2 Enabled
org.esa.s2tbx.s2tbx.radiometric.indices.ui 7.0.0 Enabled
org.esa.snap.snap.gpf.ui 7.0.3 Enabled
org.netbeans.modules.templates 1.7.1 Enabled
org.esa.snap.ceres.core 7.0.3 Enabled
org.esa.snap.snap.raster 7.0.3 Enabled
org.esa.snap.netbeans.tile 1.0 Enabled
org.esa.s3tbx.s3tbx.slstr.regrid 7.0.2 Enabled
org.openide.util.enumerations 6.33.1 Installed org.esa.snap.snap.csv.dataio 7.0.3 Enabled
org.netbeans.modules.extbrowser 1.53.1 Enabled
org.openide.actions 6.39.1 Enabled
org.openide.compat 6.39.1 Installed org.esa.s2tbx.Pansharpening.bayes 7.0.0 Available org.esa.s1tbx.s1tbx.op.analysis.ui 7.0.2 Enabled
org.esa.snap.seadas.seadas.reader.ui 1.8.2 Enabled
org.esa.snap.snap.pixel.extraction 7.0.3 Enabled
org.openide.loaders 7.66.1 Enabled
org.esa.s2tbx.s2tbx.gdal.reader.ui 7.0.0 Enabled
org.openide.nodes 7.45.1 Enabled
org.netbeans.modules.keyring.fallback 1.8.1 Enabled
org.esa.snap.snap.binning 7.0.3 Enabled
org.netbeans.swing.outline 1.34.1 Enabled
org.esa.s1tbx.s1tbx.op.feature.extraction 7.0.2 Enabled
org.openide.io 1.49.1 Enabled
org.esa.s3tbx.s3tbx.merisl3.reader 7.0.2 Enabled
org.esa.snap.snap.pixel.extraction.ui 7.0.3 Enabled
org.jlinda.jlinda.nest 7.0.2 Enabled
org.esa.s3tbx.s3tbx.fub.wew.ui 7.0.2 Enabled
org.esa.s2tbx.s2tbx.spot.reader 7.0.0 Enabled
org.esa.s2tbx.s2tbx.radiometric.indices 7.0.0 Enabled
net.java.html.geo 1.3.0 Installed org.esa.snap.snap.gpf 7.0.3 Enabled
org.esa.snap.snap.land.cover.ui 7.0.3 Enabled
org.netbeans.libs.asm 5.3.1 Enabled
org.esa.s2tbx.s2tbx.muscate.reader 7.0.0 Enabled
org.esa.snap.snap.bigtiff 7.0.3 Enabled
org.esa.snap.snap.tango 7.0.3 Enabled
org.esa.s2tbx.s2tbx.grm.ui 7.0.0 Enabled
org.esa.s3tbx.s3tbx.meris.smac 7.0.2 Enabled
org.esa.smostbx.smos.tools 5.6.0 Available org.netbeans.modules.masterfs.linux 1.13.1 Enabled
org.netbeans.modules.favorites 1.46.1 Enabled
eu.s2gm.s2gm.snap.plugins 1.2.2 Available org.esa.s1tbx.s1tbx.op.sar.processing 7.0.2 Enabled
org.esa.snap.snap.rut 2.0 Available org.netbeans.modules.options.keymap 1.37.1 Enabled
org.esa.snap.snap.arcbingrid.reader 7.0.3 Enabled
org.esa.snap.snap.envisat.reader 7.0.3 Enabled
org.netbeans.modules.queries 1.43.1 Enabled
org.esa.sen2coral.sen2coral.algorithms 1.0.0 Available org.esa.snap.idepix.modis 7.0.0 Available org.esa.s3tbx.s3tbx.insitu.client.ui 7.0.2 Enabled
org.vito.probavbox.probavbox.kit 2.1.0 Available org.esa.s2tbx.s2tbx.rapideye.reader 7.0.0 Enabled
org.netbeans.modules.editor.mimelookup 1.40.1 Enabled
org.esa.smostbx.smos.gui 5.6.0 Available org.esa.snap.snap.worldwind 7.0.3 Enabled
org.esa.s1tbx.s1tbx.rcp 7.0.2 Enabled
org.esa.snap.snap.jython 7.0.3 Enabled
org.esa.snap.ceres.glayer 7.0.3 Enabled
org.esa.s3tbx.s3tbx.arc.ui 7.0.2 Enabled
org.netbeans.libs.felix 2.15.1 Enabled
org.esa.s2tbx.Segmentation.cc 7.0.0 Available org.csa.rstb.rstb.op.classification.ui 7.5.2 Enabled
org.esa.snap.snap.pconvert 7.0.3 Enabled
org.esa.snap.snap.geotiff 7.0.3 Enabled
org.netbeans.modules.progress.ui 1.33.1 Enabled
org.esa.snap.snap.virtual.file.system.ui 7.0.3 Enabled
org.netbeans.modules.masterfs.ui 2.3.1.2 Enabled
org.esa.snap.snap.rcp 7.0.3 Enabled
org.esa.s3tbx.s3tbx.atsr.reader 7.0.2 Enabled
org.netbeans.core.multiview 1.44.1 Installed org.esa.s1tbx.s1tbx.op.insar 7.0.2 Enabled
org.esa.sen2coral.sen2coral.inversion.ui 1.0.0 Available net.java.html.boot.fx 1.3.0 Installed org.netbeans.api.visual 2.47.1 Installed org.esa.snap.snap.classification 7.0.3 Enabled
jcl.over.slf4j 1.7.5 Installed org.netbeans.modules.keyring.impl 1.24.1 Enabled
org.openide.options 6.37.1 Installed org.openide.explorer 6.62.1 Enabled
org.esa.s2tbx.Pansharpening.rcs 7.0.0 Available org.openide.filesystems.compat8 9.9.1 Enabled
org.esa.snap.snap.cluster.analysis 7.0.3 Enabled
org.esa.snap.snap.classification.ui 7.0.3 Enabled
org.esa.s1tbx.s1tbx.op.calibration.ui 7.0.2 Enabled
org.esa.s2tbx.s2tbx.jp2.reader 7.0.0 Enabled
org.netbeans.core.osgi 1.22.1 Installed org.esa.snap.snap.getasse30.dem 7.0.3 Enabled
org.netbeans.modules.netbinox 1.41.1 Installed org.esa.s2tbx.s2tbx.ikonos.reader 7.0.0 Enabled
org.esa.snap.snap.product.library 7.0.3 Enabled
org.netbeans.core.ui 1.45.1 Enabled
org.esa.s3tbx.s3tbx.c2rcc 7.0.2 Enabled
org.netbeans.core.startup.base 1.62.1.1 Enabled
org.esa.snap.snap.watermask.ui 7.0.3 Enabled
org.esa.snap.snap.virtual.file.system 7.0.3 Enabled
org.esa.snap.idepix.spotvgt 7.0.0 Available org.netbeans.modules.core.kit 1.30.1 Enabled
org.esa.s2tbx.s2tbx.worldview2.reader 7.0.0 Enabled
org.esa.snap.idepix.landsat8 7.0.0 Available org.csa.rstb.rstb.kit 7.5.2 Enabled
org.esa.s2tbx.s2tbx.biophysical 7.0.0 Enabled
org.esa.sen2coral.sen2coral.inversion 1.0.0 Available org.esa.smostbx.smos.reader 5.6.0 Available org.netbeans.libs.junit4 1.17.1 Installed org.esa.s3tbx.s3tbx.meris.brr 7.0.2 Enabled
org.esa.s1tbx.s1tbx.op.utilities.ui 7.0.2 Enabled
org.esa.snap.snap.sta 7.0.3 Enabled
org.esa.snap.idepix.viirs 7.0.0 Available org.netbeans.modules.autoupdate.services 1.52.1 Enabled
org.esa.snap.seadas.seadas.reader 1.8.2 Enabled
org.esa.snap.snap.watermask 7.0.3 Enabled
org.esa.s1tbx.s1tbx.op.ocean.ui 7.0.2 Enabled
org.esa.smostbx.smos.kit 5.6.0 Available org.esa.snap.snap.collocation.ui 7.0.3 Enabled
org.esa.snap.snap.dem 7.0.3 Enabled
org.netbeans.core.network 1.10.1 Enabled
org.esa.snap.idepix.olci 7.0.1 Enabled
org.esa.snap.snap.envi.reader 7.0.3 Enabled
org.netbeans.api.search 1.21.1 Installed org.openide.filesystems.nb 9.9.1 Enabled
org.netbeans.modules.keyring 1.24.1 Enabled
org.netbeans.core.windows 2.81.1 Enabled
org.netbeans.api.templates 1.7.1 Enabled
org.esa.snap.snap.netcdf 7.0.3 Enabled
org.esa.s3tbx.s3tbx.arc 7.0.2 Enabled
org.esa.s3tbx.s3tbx.alos.reader 7.0.2 Enabled
org.netbeans.modules.autoupdate.cli 1.13.1 Enabled
org.esa.s1tbx.s1tbx.io.ephemeris 7.0.2 Enabled
org.esa.s2tbx.s2tbx.spectral.angle.mapper 7.0.0 Enabled
org.netbeans.modules.uihandler 2.35.1 Installed org.esa.snap.snap.virtual.file.system.preferences. 7.0.3 Enabled
org.esa.s1tbx.s1tbx.op.utilities 7.0.2 Enabled
org.esa.s2tbx.s2tbx.s2msi.reader.ui 7.0.0 Enabled
org.esa.s2tbx.s2tbx.coregistration.ui 7.0.0 Enabled
org.netbeans.modules.templatesui 1.3.1 Installed org.esa.s3tbx.s3tbx.fub.wew 7.0.2 Enabled
org.esa.snap.snap.binning.ui 7.0.3 Enabled
org.esa.s3tbx.s3tbx.owt.classification 7.0.2 Enabled
org.esa.s2tbx.lib.gdal 7.0.0 Enabled
org.esa.s2tbx.sen2cor280 7.0.0 Available org.esa.snap.idepix.seawifs 7.0.0 Available org.esa.snap.netbeans.docwin 1.0.2.0 Enabled
org.esa.s2tbx.MultivariateAlterationDetector 7.0.0 Available org.netbeans.bootstrap 2.76.1 Enabled
org.vito.probavbox.probavbox.reader 2.1.0 Available org.netbeans.modules.print 7.26.1 Enabled
org.jlinda.jlinda.core 7.0.2 Enabled
org.esa.s2tbx.s2tbx.kompsat2.reader 7.0.0 Enabled
org.openide.util 9.7.1 Enabled
org.netbeans.modules.spi.actions 1.28.1 Installed org.esa.s1tbx.s1tbx.op.feature.extraction.ui 7.0.2 Enabled
com.airbus.snap.snap.novasar.reader 1.1.0 Available org.esa.s3tbx.s3tbx.avhrr.reader 7.0.2 Enabled
org.esa.snap.ceres.jai 7.0.3 Enabled
org.esa.s2tbx.s2tbx.s2msi.mci.ui 7.0.0 Enabled
org.esa.snap.core.gpf.operators.tooladapter.snaphu 7.0.0 Available org.esa.s2tbx.s2tbx.coregistration 7.0.0 Enabled
org.esa.s2tbx.s2tbx.reflectance.to.radiance 7.0.0 Enabled
org.jlinda.jlinda.nest.ui 7.0.2 Enabled
org.esa.snap.idepix.meris 7.0.0 Available org.netbeans.core.io.ui 1.30.1 Enabled
org.netbeans.html.xhr4j 1.3.0 Installed org.netbeans.api.progress.compat8 1.47.1 Installed org.openide.dialogs 7.42.1 Enabled
org.esa.snap.blue.marble.worldmap 7.0.3 Enabled
org.esa.snap.snap.hdf5.writer 7.0.3 Enabled
org.esa.snap.snap.land.cover 7.0.3 Enabled
org.openide.awt 7.67.1 Enabled
org.esa.s3tbx.s3tbx.modis.reader 7.0.2 Enabled
org.netbeans.api.io 1.3.1 Enabled
org.netbeans.api.intent 1.2.1 Enabled
org.esa.s3tbx.s3tbx.rad2refl 7.0.2 Enabled
com.iceye.esa.snap.iceye.slc.reader 2.0.7 Enabled
org.csa.rstb.rstb.op.classification 7.5.2 Enabled
org.csa.rstb.rstb.op.polarimetric.tools.ui 7.5.2 Enabled
org.esa.s2tbx.s2tbx.alosPRI.reader 7.0.0 Enabled
org.esa.s2tbx.Pansharpening.lmvm 7.0.0 Available org.netbeans.api.progress.nb 1.47.1 Enabled
org.esa.s2tbx.s2tbx.pleiades.reader 7.0.0 Enabled
org.esa.s2tbx.lib.openjpeg 7.0.0 Enabled
org.esa.s3tbx.s3tbx.slstr.pdu.stitching.ui 7.0.2 Enabled
org.esa.s2tbx.s2tbx.preferences.ui 7.0.0 Enabled
org.esa.s3tbx.s3tbx.flhmci 7.0.2 Enabled
org.esa.s2tbx.s2tbx.forest.cover.change.ui 7.0.0 Enabled
org.netbeans.api.progress 1.47.1 Enabled
net.java.html.sound 1.3.0 Installed ncsa.hdf.lib.hdf 2.7.1 Enabled
org.esa.s2tbx.s2tbx.commons 7.0.0 Enabled
org.openide.util.ui 9.6.1 Enabled
org.esa.s2tbx.s2tbx.cache 7.0.0 Enabled
org.netbeans.libs.javafx 2.7.1 Installed org.esa.s3tbx.s3tbx.aatsr.sst 7.0.2 Enabled
org.openide.text 6.67.1 Enabled
org.esa.snap.snap.help 7.0.3 Enabled
org.esa.smostbx.smos.ee2netcdf.ui 5.6.0 Available org.esa.s3tbx.s3tbx.meris.ops 7.0.2 Enabled
org.esa.snap.snap.ui 7.0.3 Enabled
org.netbeans.libs.osgi 1.21.1 Enabled
org.esa.snap.idepix.s2msi 7.0.1 Available org.esa.s2tbx.s2tbx.s2msi.resampler 7.0.0 Enabled
org.esa.s2tbx.s2tbx.spectral.angle.mapper.ui 7.0.0 Enabled
org.esa.s2tbx.Segmentation.meanshift 7.0.0 Available org.esa.s3tbx.s3tbx.flhmci.ui 7.0.2 Enabled
net.java.html.json 1.3.0 Installed org.netbeans.core.startup 1.62.1.1 Enabled
org.esa.s3tbx.s3tbx.meris.radiometry 7.0.2 Enabled
org.esa.smostbx.smos.dgg 5.6.0 Available org.netbeans.core.execution 1.41.1 Enabled
org.esa.s3tbx.s3tbx.kit 7.0.2 Enabled
org.esa.s3tbx.s3tbx.meris.radiometry.ui 7.0.2 Enabled
org.esa.smostbx.smos.lsmask 5.6.0 Available org.esa.s1tbx.s1tbx.op.sar.processing.ui 7.0.2 Enabled
org.esa.snap.ceres.binio 7.0.3 Enabled
org.netbeans.core 3.51.1 Enabled
org.netbeans.modules.sendopts 2.35.1 Enabled
org.esa.snap.ceres.binding 7.0.3 Enabled
org.esa.snap.snap.raster.ui 7.0.3 Enabled
org.jdesktop.layout 1.33.1 Installed net.java.html.boot 1.3.0 Installed net.java.html.boot.script 1.3.0 Installed org.esa.snap.snap.engine.kit 7.0.3 Enabled
org.esa.snap.snap.product.library.ui 7.0.3 Enabled
org.esa.snap.snap.sta.ui 7.0.3 Enabled
org.esa.s2tbx.s2tbx.reflectance.to.radiance.ui 7.0.0 Enabled
org.csa.rstb.rstb.io 7.5.2 Enabled
org.netbeans.core.nativeaccess 1.31.1 Enabled
org.esa.snap.idepix.core 7.0.1 Enabled
org.esa.s3tbx.s3tbx.chris.reader 7.0.2 Enabled
org.esa.s3tbx.s3tbx.ppe.operator 7.0.2 Enabled
org.esa.snap.snap.engine.utilities 7.0.3 Enabled
org.esa.s2tbx.s2tbx.deimos.reader 7.0.0 Enabled
org.esa.snap.snap.dem.ui 7.0.3 Enabled
org.esa.s1tbx.s1tbx.op.sentinel1.ui 7.0.2 Enabled
org.netbeans.modules.settings 1.49.1 Enabled
org.esa.s2tbx.sen2cor255 7.0.0 Available org.esa.snap.ceres.metadata 7.0.3 Enabled
org.esa.s2tbx.s2tbx.spot6.reader 7.0.0 Enabled
org.esa.s1tbx.s1tbx.op.sentinel1 7.0.2 Enabled
org.netbeans.modules.masterfs 2.55.1.2 Enabled
org.netbeans.lib.uihandler 1.45.1 Installed org.esa.s2tbx.SFSTextureExtraction 7.0.0 Available org.esa.sen2coral.sen2coral.algorithms.ui 1.0.0 Available org.esa.s2tbx.Segmentation.watershed 7.0.0 Available net.java.html 1.3.0 Installed org.esa.s1tbx.s1tbx.op.insar.ui 7.0.2 Enabled
org.esa.s2tbx.s2tbx.cache.ui 7.0.0 Enabled
org.esa.smostbx.smos.ee2netcdf 5.6.0 Available org.esa.s3tbx.s3tbx.slstr.pdu.stitching 7.0.2 Enabled
org.netbeans.core.multitabs 1.12.1.1 Enabled
org.esa.s2tbx.s2tbx.sta.adapters.help 7.0.0 Enabled
org.netbeans.modules.editor.mimelookup.impl 1.32.1 Enabled
org.esa.s3tbx.s3tbx.meris.sdr 7.0.2 Enabled
org.openide.filesystems 9.10.1 Enabled
org.esa.snap.snap.graph.builder 7.0.3 Enabled
org.esa.s2tbx.s2tbx.kit 7.0.0 Enabled
org.esa.s2tbx.Segmentation.mprofiles 7.0.0 Available org.netbeans.modules.extexecution.base 1.4.1 Enabled
org.netbeans.api.htmlui 1.5.1 Installed org.esa.s3tbx.s3tbx.rad2refl.ui 7.0.2 Enabled
org.esa.s1tbx.s1tbx.io 7.0.2 Enabled
org.netbeans.swing.tabcontrol 1.56.1 Enabled
org.esa.s2tbx.s2tbx.s2msi.mci 7.0.0 Enabled
org.netbeans.libs.jna 1.44.1 Enabled
org.esa.snap.snap.unmix 7.0.3 Enabled
org.netbeans.html.ko4j 1.3.0 Installed org.esa.s2tbx.s2tbx.grm 7.0.0 Enabled
org.esa.snap.snap.remote.execution 7.0.3 Enabled
org.esa.snap.snap.ndvi 7.0.3 Enabled
org.esa.s2tbx.s2tbx.jp2.writer 7.0.0 Enabled
org.esa.s3tbx.s3tbx.meris.cloud 7.0.2 Enabled
org.netbeans.modules.javahelp 2.41.1 Enabled
org.openide.execution.compat8 9.2.1 Installed org.esa.s3tbx.s3tbx.fu.operator 7.0.2 Enabled
org.esa.s1tbx.s1tbx.op.calibration 7.0.2 Enabled
org.netbeans.libs.jsr223 1.35.1 Installed

+end_example

Sort

+BEGIN_SRC bash :results table :exports results :var table=snap_versions

echo "${table}" | head -n4 | while read line; do echo $line ; done

echo "${table}" | tail -n +6 | sort | while read line; do echo $line; done | grep -v "^$"

+END_SRC

+RESULTS:

| -------------------------------------------------- | -------- | --------- | | com.airbus.snap.snap.novasar.reader | 1.1.0 | Available | | com.iceye.esa.snap.iceye.slc.reader | 2.0.7 | Enabled | | eu.s2gm.s2gm.snap.plugins | 1.2.2 | Available | | jcl.over.slf4j | 1.7.5 | Installed | | ncsa.hdf.lib.hdf | 2.7.1 | Enabled | | net.java.html | 1.3.0 | Installed | | net.java.html.boot | 1.3.0 | Installed | | net.java.html.boot.fx | 1.3.0 | Installed | | net.java.html.boot.script | 1.3.0 | Installed | | net.java.html.geo | 1.3.0 | Installed | | net.java.html.json | 1.3.0 | Installed | | net.java.html.sound | 1.3.0 | Installed | | org.csa.rstb.rstb.io | 7.5.2 | Enabled | | org.csa.rstb.rstb.kit | 7.5.2 | Enabled | | org.csa.rstb.rstb.op.classification | 7.5.2 | Enabled | | org.csa.rstb.rstb.op.classification.ui | 7.5.2 | Enabled | | org.csa.rstb.rstb.op.polarimetric.tools | 7.5.2 | Enabled | | org.csa.rstb.rstb.op.polarimetric.tools.ui | 7.5.2 | Enabled | | org.esa.s1tbx.s1tbx.commons | 7.0.2 | Enabled | | org.esa.s1tbx.s1tbx.io | 7.0.2 | Enabled | | org.esa.s1tbx.s1tbx.io.ephemeris | 7.0.2 | Enabled | | org.esa.s1tbx.s1tbx.kit | 7.0.2 | Enabled | | org.esa.s1tbx.s1tbx.op.analysis.ui | 7.0.2 | Enabled | | org.esa.s1tbx.s1tbx.op.calibration | 7.0.2 | Enabled | | org.esa.s1tbx.s1tbx.op.calibration.ui | 7.0.2 | Enabled | | org.esa.s1tbx.s1tbx.op.feature.extraction | 7.0.2 | Enabled | | org.esa.s1tbx.s1tbx.op.feature.extraction.ui | 7.0.2 | Enabled | | org.esa.s1tbx.s1tbx.op.insar | 7.0.2 | Enabled | | org.esa.s1tbx.s1tbx.op.insar.ui | 7.0.2 | Enabled | | org.esa.s1tbx.s1tbx.op.ocean.ui | 7.0.2 | Enabled | | org.esa.s1tbx.s1tbx.op.sar.processing | 7.0.2 | Enabled | | org.esa.s1tbx.s1tbx.op.sar.processing.ui | 7.0.2 | Enabled | | org.esa.s1tbx.s1tbx.op.sentinel1 | 7.0.2 | Enabled | | org.esa.s1tbx.s1tbx.op.sentinel1.ui | 7.0.2 | Enabled | | org.esa.s1tbx.s1tbx.op.utilities | 7.0.2 | Enabled | | org.esa.s1tbx.s1tbx.op.utilities.ui | 7.0.2 | Enabled | | org.esa.s1tbx.s1tbx.rcp | 7.0.2 | Enabled | | org.esa.s2tbx.lib.gdal | 7.0.0 | Enabled | | org.esa.s2tbx.lib.openjpeg | 7.0.0 | Enabled | | org.esa.s2tbx.MultivariateAlterationDetector | 7.0.0 | Available | | org.esa.s2tbx.Pansharpening.bayes | 7.0.0 | Available | | org.esa.s2tbx.Pansharpening.lmvm | 7.0.0 | Available | | org.esa.s2tbx.Pansharpening.rcs | 7.0.0 | Available | | org.esa.s2tbx.s2tbx.alosAV2.reader | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.alosPRI.reader | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.biophysical | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.cache | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.cache.ui | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.commons | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.coregistration | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.coregistration.ui | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.deimos.reader | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.forest.cover.change | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.forest.cover.change.ui | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.gdal.reader | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.gdal.reader.ui | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.grm | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.grm.ui | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.ikonos.reader | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.jp2.reader | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.jp2.writer | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.kit | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.kompsat2.reader | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.land.cover | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.muscate.reader | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.otb.adapters.kit | 7.0.0 | Available | | org.esa.s2tbx.s2tbx.pleiades.reader | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.preferences.ui | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.radiometric.indices | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.radiometric.indices.ui | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.rapideye.reader | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.reflectance.to.radiance | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.reflectance.to.radiance.ui | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.s2msi.mci | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.s2msi.mci.ui | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.s2msi.reader | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.s2msi.reader.ui | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.s2msi.resampler | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.spectral.angle.mapper | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.spectral.angle.mapper.ui | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.spot6.reader | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.spot.reader | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.sta.adapters.help | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.worldview2esa.reader | 7.0.0 | Enabled | | org.esa.s2tbx.s2tbx.worldview2.reader | 7.0.0 | Enabled | | org.esa.s2tbx.Segmentation.cc | 7.0.0 | Available | | org.esa.s2tbx.Segmentation.meanshift | 7.0.0 | Available | | org.esa.s2tbx.Segmentation.mprofiles | 7.0.0 | Available | | org.esa.s2tbx.Segmentation.watershed | 7.0.0 | Available | | org.esa.s2tbx.sen2cor255 | 7.0.0 | Available | | org.esa.s2tbx.sen2cor280 | 7.0.0 | Available | | org.esa.s2tbx.SFSTextureExtraction | 7.0.0 | Available | | org.esa.s3tbx.s3tbx.aatsr.sst | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.aatsr.sst.ui | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.alos.reader | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.arc | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.arc.ui | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.atsr.reader | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.avhrr.reader | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.c2rcc | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.chris.reader | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.flhmci | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.flhmci.ui | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.fub.wew | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.fub.wew.ui | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.fu.operator | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.insitu.client.ui | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.kit | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.landsat.reader | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.meris.brr | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.meris.cloud | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.meris.l2auxdata | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.merisl3.reader | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.meris.ops | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.meris.radiometry | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.meris.radiometry.ui | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.meris.sdr | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.meris.smac | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.modis.reader | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.mphchl | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.o2a.harmonisation | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.olci.radiometry | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.owt.classification | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.ppe.operator | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.rad2refl | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.rad2refl.ui | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.sentinel3.reader | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.sentinel3.reader.ui | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.slstr.pdu.stitching | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.slstr.pdu.stitching.ui | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.slstr.regrid | 7.0.2 | Enabled | | org.esa.s3tbx.s3tbx.spot.vgt.reader | 7.0.2 | Enabled | | org.esa.sen2coral.sen2coral.algorithms | 1.0.0 | Available | | org.esa.sen2coral.sen2coral.algorithms.ui | 1.0.0 | Available | | org.esa.sen2coral.sen2coral.inversion | 1.0.0 | Available | | org.esa.sen2coral.sen2coral.inversion.ui | 1.0.0 | Available | | org.esa.sen2coral.sen2coral.kit | 1.0.0 | Available | | org.esa.smostbx.smos.dgg | 5.6.0 | Available | | org.esa.smostbx.smos.ee2netcdf | 5.6.0 | Available | | org.esa.smostbx.smos.ee2netcdf.ui | 5.6.0 | Available | | org.esa.smostbx.smos.gui | 5.6.0 | Available | | org.esa.smostbx.smos.kit | 5.6.0 | Available | | org.esa.smostbx.smos.lsmask | 5.6.0 | Available | | org.esa.smostbx.smos.reader | 5.6.0 | Available | | org.esa.smostbx.smos.tools | 5.6.0 | Available | | org.esa.snap.blue.marble.worldmap | 7.0.3 | Enabled | | org.esa.snap.ceres.binding | 7.0.3 | Enabled | | org.esa.snap.ceres.binio | 7.0.3 | Enabled | | org.esa.snap.ceres.core | 7.0.3 | Enabled | | org.esa.snap.ceres.glayer | 7.0.3 | Enabled | | org.esa.snap.ceres.jai | 7.0.3 | Enabled | | org.esa.snap.ceres.metadata | 7.0.3 | Enabled | | org.esa.snap.ceres.ui | 7.0.3 | Enabled | | org.esa.snap.core.gpf.operators.tooladapter.snaphu | 7.0.0 | Available | | org.esa.snap.globcover.worldmap | 7.0.3 | Enabled | | org.esa.snap.idepix.core | 7.0.1 | Enabled | | org.esa.snap.idepix.landsat8 | 7.0.0 | Available | | org.esa.snap.idepix.meris | 7.0.0 | Available | | org.esa.snap.idepix.modis | 7.0.0 | Available | | org.esa.snap.idepix.olci | 7.0.1 | Enabled | | org.esa.snap.idepix.probav | 7.0.0 | Available | | org.esa.snap.idepix.s2msi | 7.0.1 | Available | | org.esa.snap.idepix.seawifs | 7.0.0 | Available | | org.esa.snap.idepix.spotvgt | 7.0.0 | Available | | org.esa.snap.idepix.viirs | 7.0.0 | Available | | org.esa.snap.netbeans.docwin | 1.0.2.0 | Enabled | | org.esa.snap.netbeans.tile | 1.0 | Enabled | | org.esa.snap.seadas.seadas.reader | 1.8.2 | Enabled | | org.esa.snap.seadas.seadas.reader.ui | 1.8.2 | Enabled | | org.esa.snap.snap.arcbingrid.reader | 7.0.3 | Enabled | | org.esa.snap.snap.bigtiff | 7.0.3 | Enabled | | org.esa.snap.snap.binning | 7.0.3 | Enabled | | org.esa.snap.snap.binning.ui | 7.0.3 | Enabled | | org.esa.snap.snap.branding | 7.0.3 | Enabled | | org.esa.snap.snap.classification | 7.0.3 | Enabled | | org.esa.snap.snap.classification.ui | 7.0.3 | Enabled | | org.esa.snap.snap.cluster.analysis | 7.0.3 | Enabled | | org.esa.snap.snap.collocation | 7.0.3 | Enabled | | org.esa.snap.snap.collocation.ui | 7.0.3 | Enabled | | org.esa.snap.snap.core | 7.0.3 | Enabled | | org.esa.snap.snap.csv.dataio | 7.0.3 | Enabled | | org.esa.snap.snap.dem | 7.0.3 | Enabled | | org.esa.snap.snap.dem.ui | 7.0.3 | Enabled | | org.esa.snap.snap.engine.kit | 7.0.3 | Enabled | | org.esa.snap.snap.engine.utilities | 7.0.3 | Enabled | | org.esa.snap.snap.envi.reader | 7.0.3 | Enabled | | org.esa.snap.snap.envisat.reader | 7.0.3 | Enabled | | org.esa.snap.snap.geotiff | 7.0.3 | Enabled | | org.esa.snap.snap.getasse30.dem | 7.0.3 | Enabled | | org.esa.snap.snap.gpf | 7.0.3 | Enabled | | org.esa.snap.snap.gpf.ui | 7.0.3 | Enabled | | org.esa.snap.snap.graph.builder | 7.0.3 | Enabled | | org.esa.snap.snap.hdf5.writer | 7.0.3 | Enabled | | org.esa.snap.snap.help | 7.0.3 | Enabled | | org.esa.snap.snap.jython | 7.0.3 | Enabled | | org.esa.snap.snap.land.cover | 7.0.3 | Enabled | | org.esa.snap.snap.land.cover.ui | 7.0.3 | Enabled | | org.esa.snap.snap.ndvi | 7.0.3 | Enabled | | org.esa.snap.snap.netcdf | 7.0.3 | Enabled | | org.esa.snap.snap.pconvert | 7.0.3 | Enabled | | org.esa.snap.snap.pgx.reader | 7.0.3 | Enabled | | org.esa.snap.snap.pixel.extraction | 7.0.3 | Enabled | | org.esa.snap.snap.pixel.extraction.ui | 7.0.3 | Enabled | | org.esa.snap.snap.product.library | 7.0.3 | Enabled | | org.esa.snap.snap.product.library.ui | 7.0.3 | Enabled | | org.esa.snap.snap.python | 7.0.3 | Enabled | | org.esa.snap.snap.raster | 7.0.3 | Enabled | | org.esa.snap.snap.raster.ui | 7.0.3 | Enabled | | org.esa.snap.snap.rcp | 7.0.3 | Enabled | | org.esa.snap.snap.remote.execution | 7.0.3 | Enabled | | org.esa.snap.snap.remote.execution.ui | 7.0.3 | Enabled | | org.esa.snap.snap.rut | 2.0 | Available | | org.esa.snap.snap.smart.configurator | 7.0.3 | Enabled | | org.esa.snap.snap.smart.configurator.ui | 7.0.3 | Enabled | | org.esa.snap.snap.sta | 7.0.3 | Enabled | | org.esa.snap.snap.statistics | 7.0.3 | Enabled | | org.esa.snap.snap.sta.ui | 7.0.3 | Enabled | | org.esa.snap.snap.tango | 7.0.3 | Enabled | | org.esa.snap.snap.temporal.percentile | 7.0.3 | Enabled | | org.esa.snap.snap.ui | 7.0.3 | Enabled | | org.esa.snap.snap.unmix | 7.0.3 | Enabled | | org.esa.snap.snap.unmix.ui | 7.0.3 | Enabled | | org.esa.snap.snap.virtual.file.system | 7.0.3 | Enabled | | org.esa.snap.snap.virtual.file.system.preferences. | 7.0.3 | Enabled | | org.esa.snap.snap.virtual.file.system.ui | 7.0.3 | Enabled | | org.esa.snap.snap.watermask | 7.0.3 | Enabled | | org.esa.snap.snap.watermask.ui | 7.0.3 | Enabled | | org.esa.snap.snap.worldwind | 7.0.3 | Enabled | | org.jdesktop.layout | 1.33.1 | Installed | | org.jlinda.jlinda.core | 7.0.2 | Enabled | | org.jlinda.jlinda.nest | 7.0.2 | Enabled | | org.jlinda.jlinda.nest.ui | 7.0.2 | Enabled | | org.netbeans.api.annotations.common | 1.27.1 | Enabled | | org.netbeans.api.htmlui | 1.5.1 | Installed | | org.netbeans.api.intent | 1.2.1 | Enabled | | org.netbeans.api.io | 1.3.1 | Enabled | | org.netbeans.api.progress | 1.47.1 | Enabled | | org.netbeans.api.progress.compat8 | 1.47.1 | Installed | | org.netbeans.api.progress.nb | 1.47.1 | Enabled | | org.netbeans.api.search | 1.21.1 | Installed | | org.netbeans.api.templates | 1.7.1 | Enabled | | org.netbeans.api.visual | 2.47.1 | Installed | | org.netbeans.bootstrap | 2.76.1 | Enabled | | org.netbeans.core | 3.51.1 | Enabled | | org.netbeans.core.execution | 1.41.1 | Enabled | | org.netbeans.core.io.ui | 1.30.1 | Enabled | | org.netbeans.core.multitabs | 1.12.1.1 | Enabled | | org.netbeans.core.multiview | 1.44.1 | Installed | | org.netbeans.core.nativeaccess | 1.31.1 | Enabled | | org.netbeans.core.netigso | 1.31.1 | Enabled | | org.netbeans.core.network | 1.10.1 | Enabled | | org.netbeans.core.osgi | 1.22.1 | Installed | | org.netbeans.core.output2 | 1.41.1 | Enabled | | org.netbeans.core.startup | 1.62.1.1 | Enabled | | org.netbeans.core.startup.base | 1.62.1.1 | Enabled | | org.netbeans.core.ui | 1.45.1 | Enabled | | org.netbeans.core.windows | 2.81.1 | Enabled | | org.netbeans.html.ko4j | 1.3.0 | Installed | | org.netbeans.html.xhr4j | 1.3.0 | Installed | | org.netbeans.libs.asm | 5.3.1 | Enabled | | org.netbeans.libs.felix | 2.15.1 | Enabled | | org.netbeans.libs.javafx | 2.7.1 | Installed | | org.netbeans.libs.jna | 1.44.1 | Enabled | | org.netbeans.libs.jna.platform | 1.14.1 | Enabled | | org.netbeans.libs.jsr223 | 1.35.1 | Installed | | org.netbeans.libs.junit4 | 1.17.1 | Installed | | org.netbeans.libs.osgi | 1.21.1 | Enabled | | org.netbeans.lib.uihandler | 1.45.1 | Installed | | org.netbeans.modules.autoupdate.cli | 1.13.1 | Enabled | | org.netbeans.modules.autoupdate.services | 1.52.1 | Enabled | | org.netbeans.modules.autoupdate.ui | 1.45.1 | Enabled | | org.netbeans.modules.core.kit | 1.30.1 | Enabled | | org.netbeans.modules.editor.mimelookup | 1.40.1 | Enabled | | org.netbeans.modules.editor.mimelookup.impl | 1.32.1 | Enabled | | org.netbeans.modules.extbrowser | 1.53.1 | Enabled | | org.netbeans.modules.extexecution | 1.48.1 | Enabled | | org.netbeans.modules.extexecution.base | 1.4.1 | Enabled | | org.netbeans.modules.favorites | 1.46.1 | Enabled | | org.netbeans.modules.javahelp | 2.41.1 | Enabled | | org.netbeans.modules.keyring | 1.24.1 | Enabled | | org.netbeans.modules.keyring.fallback | 1.8.1 | Enabled | | org.netbeans.modules.keyring.impl | 1.24.1 | Enabled | | org.netbeans.modules.masterfs | 2.55.1.2 | Enabled | | org.netbeans.modules.masterfs.linux | 1.13.1 | Enabled | | org.netbeans.modules.masterfs.nio2 | 1.15.1 | Enabled | | org.netbeans.modules.masterfs.ui | 2.3.1.2 | Enabled | | org.netbeans.modules.netbinox | 1.41.1 | Installed | | org.netbeans.modules.options.api | 1.45.1 | Enabled | | org.netbeans.modules.options.keymap | 1.37.1 | Enabled | | org.netbeans.modules.print | 7.26.1 | Enabled | | org.netbeans.modules.progress.ui | 1.33.1 | Enabled | | org.netbeans.modules.queries | 1.43.1 | Enabled | | org.netbeans.modules.sampler | 1.14.1 | Enabled | | org.netbeans.modules.sendopts | 2.35.1 | Enabled | | org.netbeans.modules.settings | 1.49.1 | Enabled | | org.netbeans.modules.spi.actions | 1.28.1 | Installed | | org.netbeans.modules.templates | 1.7.1 | Enabled | | org.netbeans.modules.templatesui | 1.3.1 | Installed | | org.netbeans.modules.uihandler | 2.35.1 | Installed | | org.netbeans.spi.quicksearch | 1.27.1 | Enabled | | org.netbeans.swing.outline | 1.34.1 | Enabled | | org.netbeans.swing.plaf | 1.41.1 | Enabled | | org.netbeans.swing.tabcontrol | 1.56.1 | Enabled | | org.openide.actions | 6.39.1 | Enabled | | org.openide.awt | 7.67.1 | Enabled | | org.openide.compat | 6.39.1 | Installed | | org.openide.dialogs | 7.42.1 | Enabled | | org.openide.execution | 9.3.1 | Enabled | | org.openide.execution.compat8 | 9.2.1 | Installed | | org.openide.explorer | 6.62.1 | Enabled | | org.openide.filesystems | 9.10.1 | Enabled | | org.openide.filesystems.compat8 | 9.9.1 | Enabled | | org.openide.filesystems.nb | 9.9.1 | Enabled | | org.openide.io | 1.49.1 | Enabled | | org.openide.loaders | 7.66.1 | Enabled | | org.openide.modules | 7.48.1 | Enabled | | org.openide.nodes | 7.45.1 | Enabled | | org.openide.options | 6.37.1 | Installed | | org.openide.text | 6.67.1 | Enabled | | org.openide.util | 9.7.1 | Enabled | | org.openide.util.enumerations | 6.33.1 | Installed | | org.openide.util.lookup | 8.33.1 | Enabled | | org.openide.util.ui | 9.6.1 | Enabled | | org.openide.windows | 6.75.1 | Enabled | | org.vito.probavbox.probavbox.kit | 2.1.0 | Available | | org.vito.probavbox.probavbox.reader | 2.1.0 | Available |

Misc Notes & Code Snippets :PROPERTIES: :header-args:bash+: :eval no :END:

** Generate ice mask

Use the icemask from BedMachine v3

+BEGIN_SRC bash :results verbatim :eval no

grass72 -c EPSG:3413 ./Gtmp r.in.gdal input=NetCDF:~/data/Greenland/Morlighem_2017/BedMachineGreenland-2017-09-20.nc:mask output=icemask

g.region raster=icemask g.region res=500 -ap g.region zoom=icemask

d.mon start=wx0 d.erase d.rast icemask

r.mapcalc "mask = if(icemask == 4, null(), icemask)" --o d.rast mask g.region zoom=mask

r.out.gdal -c -m input=mask output=mask.tif type=Byte createopt=COMPRESS=DEFLATE --o exit trash Gtmp

+END_SRC

*** Buffered ice mask

+BEGIN_SRC bash :results verbatim

grass -c mask.tif ./Gtmp r.in.gdal input=mask.tif output=mask

50 cells = 25 km @ 500 m

r.mapcalc "ice = if(mask == 2, 1, null())" r.grow input=ice output=ice_grow radius=50 new=1

r.null ice_grow null=100 r.clump input=ice_grow output=clumps r.stats -c clumps sort=asc for ID in $(r.stats -c clumps sort=asc | head -n7 | cut -d" " -f1); do r.mapcalc "ice_grow = if(clumps == ${ID}, 1, ice_grow)" --o done r.null ice_grow setnull=100

r.out.gdal input=ice_grow output=ice_mask_buffer.tif format=GTiff type=Byte createopt="COMPRESS=DEFLATE" exit trash Gtmp

+END_SRC

** Footprint

Get GL outline by drawing in Google Earth, export KML, then:

+BEGIN_SRC bash :results verbatim :eval no-export

ogrinfo -al GL_outline.kml | grep LINESTRING | sed s/\ 0//g

mankoff / SICE

readme

+BEGIN_SRC bash :results verbatim

loop contents

+END_SRC

+RESULTS:

+BEGIN_SRC bash :results verbatim :exports both

+END_SRC

+RESULTS:

+BEGIN_SRC bash :results verbatim

+END_SRC

+BEGIN_SRC bash :results verbatim :exports both

+END_SRC

+RESULTS:

+begin_example

+end_example

+BEGIN_SRC bash :results verbatim :exports both

+END_SRC

+RESULTS:

+begin_example

+end_example

+BEGIN_SRC sh :results verbatim :exports both

+END_SRC

+RESULTS:

+begin_example

+end_example

Note: SNAP launches. Have to quit. Emacs spins. Press C-g. Then results appear.

+NAME: snap_versions

+BEGIN_SRC sh :results verbatim :exports code :eval yes

~/local/snap/bin/snap --nosplash --list --modules --refresh

+END_SRC

+NAME: snap_versions

+begin_example

+end_example

Sort

+BEGIN_SRC bash :results table :exports results :var table=snap_versions

echo "${table}" | head -n4 | while read line; do echo $line ; done

+END_SRC

+RESULTS:

+BEGIN_SRC bash :results verbatim :eval no

+END_SRC

+BEGIN_SRC bash :results verbatim

50 cells = 25 km @ 500 m

+END_SRC

+BEGIN_SRC bash :results verbatim :eval no-export

+END_SRC