mansuylab / SC_postnatal_adult

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Identifying clusters of genes expression in new RNA-seq data #46

Open dktanwar opened 3 years ago

dktanwar commented 3 years ago

Identify clusters of gene expression across developmental stages using union of differentially expressed genes

k-means cluster analysis

[x] cluster analysis with k = 2 to 10
[x] Heatmap of clusters

NMF rank analysis

[x] NMF analysis for ranks 2 to 10
[x] Consensus, coef, and basis plots for NMF ranks

Identifying optimal number of clusters

[ ] Identifying optimal number of clusters using several algorithms