mansuylab / SC_postnatal_adult

GNU General Public License v3.0
1 stars 0 forks source link

RNA-Seq: gene expression heatmap based on DGE #5

Open dktanwar opened 5 years ago

dktanwar commented 5 years ago

Plot heatmap of genes expression across timepoints

  1. log transform the data
  2. normalize expression to PND8 mean expression
  3. Perform k-means for clusters 2 to 10
  4. Perform serialization to identify patterns
  5. Make heatmaps for all k-means clustering
  6. Determine the best k-means
  7. Merge k-means clusters (if necessary)