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SC_postnatal_adult
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RNA-Seq: gene expression heatmap based on DGE
#5
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dktanwar
opened
5 years ago
dktanwar
commented
5 years ago
Plot heatmap of genes expression across timepoints
log
transform the data
normalize
expression to PND8
mean
expression
Perform
k-means
for clusters 2 to 10
Perform
serialization
to identify patterns
Make heatmaps for all
k-means
clustering
Determine the best
k-means
Merge
k-means
clusters (if necessary)
[x] All genes with fdr <= 0.05 and abs(LFC) >= 1
[x] Common genes with fdr <= 0.05
Plot heatmap of genes expression across timepoints
log
transform the datanormalize
expression to PND8mean
expressionk-means
for clusters 2 to 10serialization
to identify patternsk-means
clusteringk-means
k-means
clusters (if necessary)