RNA-Seq: pathway analysis using fGSEA and cameraPR - Githubissues

mansuylab / SC_postnatal_adult

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RNA-Seq: pathway analysis using fGSEA and cameraPR #7

Open dktanwar opened 5 years ago

dktanwar commented 5 years ago

ORA of clusters

Pathway analysis on KEGG and Reactome pathway databases on the following list of genes:

[x] PND8 vs PND15
[x] PND15 vs Adult

ORA of DEG using `gProfiler` for TRANSFAC

[x] PND8 vs PND15
[x] PND15 vs Adult

Plotting

[x] ClusterProfiler for plotting results