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maragkakislab
/
nanoplen
Package for the analysis of the nanopore read lengths, e.g. to calculate the significant differential transcript length.
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Fixes in descriptives
#39
leetaiyi
closed
1 week ago
0
Added Spline method
#38
leetaiyi
closed
1 week ago
0
Error in running diff_length.R
#37
doshirLV
opened
2 months ago
11
SyntaxError: invalid syntax in diff_length.R
#36
Xingliang888
closed
8 months ago
5
no transcript name using cDNA nanopore sequencing
#35
Xingliang888
closed
9 months ago
6
Resolve #22
#34
leetaiyi
closed
2 years ago
0
Added R wrapper and its tests
#33
leetaiyi
closed
2 years ago
0
Setup rpackage
#32
dar19
closed
2 years ago
1
Origin/setup rpackage
#31
dar19
closed
2 years ago
1
Several unit tests covering scenarios I can currently think of
#30
leetaiyi
closed
2 years ago
0
Enabled unit testing via testthat, more tests incoming
#29
leetaiyi
closed
2 years ago
0
Deleted defunc files
#28
leetaiyi
closed
2 years ago
0
Restructured directories, testing not done yet
#27
leetaiyi
closed
2 years ago
0
Update LICENSE: Use the NIA public domain
#26
mnsmar
closed
9 months ago
0
Improve documentation and code structure
#25
mnsmar
closed
9 months ago
6
set NULL as default for "params"
#24
leetaiyi
closed
2 years ago
0
Rename 'replicate' as 'norm_group
#23
leetaiyi
closed
2 years ago
0
Warning message aesthetics
#22
leetaiyi
closed
2 years ago
1
Not supporting a condition variable with more than 2 levels
#21
leetaiyi
closed
9 months ago
1
Fixed issue of not having params be used in linear models
#20
leetaiyi
closed
2 years ago
0
--params option not properly implemented
#19
leetaiyi
closed
2 years ago
1
Normalization implementation
#18
leetaiyi
closed
2 years ago
0
Fixing row and col names
#17
leetaiyi
closed
3 years ago
0
added count and avglen columns
#16
leetaiyi
closed
3 years ago
0
Start Travis
#15
leetaiyi
closed
3 years ago
0
Create similar file system (columns & headings) as that of DESEQ2 so users can apply the pipelines already present for deseq2 like files
#14
dar19
closed
2 years ago
1
Wilcoxon-test calculations do not generate the differential length (fold change ) values.
#13
dar19
closed
3 years ago
1
nanoplen_polyA_read_length.py: initial commit
#12
dar19
closed
3 years ago
0
Diff_length linear model throws cryptic warnings
#11
mnsmar
closed
3 years ago
1
Fix data and metadata merging and logscale option
#10
mnsmar
closed
3 years ago
0
fixed factor not being recognized as string issue
#9
leetaiyi
closed
3 years ago
0
report Wilcox stat
#8
leetaiyi
closed
3 years ago
0
added Wilcox test, not implementing KS
#7
leetaiyi
closed
3 years ago
0
custom model parameterization
#6
leetaiyi
closed
3 years ago
0
Fix mixed model
#5
leetaiyi
closed
3 years ago
0
diff_length.R ver1
#4
leetaiyi
closed
3 years ago
0
nanoplen_read_length.py: Check for optional arguments, sample as firs…
#3
dar19
closed
3 years ago
0
nanoplen_read_length.py: initial commit
#2
dar19
closed
3 years ago
1
sam_per_ref_count_statistics.py: initial commit
#1
dar19
closed
3 years ago
0