marbl meryl issues - Githubissues

marbl / meryl

A genomic k-mer counter (and sequence utility) with nice features.

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issues

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individual specific kmer could be find in other individual

#53 leon945945 opened 9 hours ago
2
How to get haplotype-specific reads?

#52 DayTimeMouse opened 2 months ago
5
conda install may have broken (possibly with a recent update?)

#51 JohnUrban closed 2 months ago
1
How to get kmer count in query fastq files with kmer database

#50 leon945945 opened 3 months ago
2
Run Meryl on multiple fastq files

#49 NicMAlexandre opened 4 months ago
6
Is this output correct?

#48 syresbr closed 5 months ago
2
Use sequence to query meryl db

#47 Adamtaranto opened 5 months ago
1
API docs

#46 Adamtaranto opened 5 months ago
1
How to install meryl2？

#45 socialhang opened 6 months ago
1
meryl count assertion failed with large K

#44 Dmitry-Antipov opened 6 months ago
1
Conda version issues

#43 nhartwic opened 7 months ago
0
version question about meryl

#42 bucongfan opened 7 months ago
1
How do you plot?

#41 ghost opened 8 months ago
3
the parental specific kmers were intersected in progeny genome

#40 leon945945 closed 4 months ago
2
feature request: filter reads with kmers from bam file?

#39 kevfengler227 opened 11 months ago
5
Compile error

#38 Han-Cao closed 1 year ago
2
bitArray-v1.H:86 problem when running the pipeline

#37 mike-bioinfo opened 1 year ago
1
[Compile] ‘gettimeofday’ was not declared in this scope

#36 shawarden opened 1 year ago
1
meryl terminates with 'std::bad_alloc' and failed assertion

#35 wangjie07070910 opened 1 year ago
3
Add `-fpermissive` to the `Makefile`

#34 AndreaGuarracino closed 8 months ago
2
How to cite meryl?

#33 rsharris closed 1 year ago
4
compile problem

#32 Solenyalyl opened 1 year ago
2
Homopolymer compression is not applied if the first read file is empty

#31 maickrau opened 1 year ago
1
database file parameters used in count output are too large

#30 brianwalenz opened 1 year ago
0
'output' at end of command fails

#29 brianwalenz opened 1 year ago
0
Avoid memory leak during configuration.

#28 mphschmitt closed 2 years ago
0
Fix help typos.

#27 mphschmitt closed 2 years ago
1
segmentation fault for k<6

#26 JonEilers closed 2 years ago
3
meryl-lookup -include

#25 duhuipeng opened 3 years ago
1
Using meryl to prepare for Merqury

#24 aureliendejode opened 3 years ago
2
ERROR: operation 'opNothing' cannot use sequence files as inputs.

#23 Gon1976 closed 3 years ago
6
eval/qv.sh meryl command not working

#22 mas160 opened 3 years ago
1
Logging of reads kept and total reads wrong in lookup -exclude

#21 ASLeonard opened 3 years ago
0
Distinct parameter not documented

#20 gallardoalba opened 3 years ago
0
hap_blot.sh

#19 duhuipeng closed 3 years ago
1
use meryl

#18 duhuipeng opened 3 years ago
1
How to use meryl

#17 Kalpi-ds opened 4 years ago
7
Seg fault in union-sum

#16 tbrown91 closed 4 years ago
3
fatal: clone of 'git@github.com:marbl/meryl-utility' into submodule path 'canu/src/utility' failed

#15 linsalrob closed 4 years ago
2
Support for printing top x % of most frequent k-mers

#14 cjain7 opened 4 years ago
0
add support for homopolymer compressing the input sequence

#13 brianwalenz opened 4 years ago
0
add conversion to 'usual' acgt ordering to get canonical mer correct

#12 brianwalenz opened 4 years ago
0
allow a histogram to be generated from streamed data

#11 brianwalenz opened 4 years ago
0
add math operations on values

#10 brianwalenz opened 4 years ago
0
Feature request

#9 gf777 opened 4 years ago
0
Add-on feature request: keep meryl database in memory

#8 SHuang-Broad opened 4 years ago
0
Segfault with k >= 38

#7 mrvollger closed 5 years ago
4
Q: Use this repo or Canu 1.8 for read-partitioning?

#6 SHuang-Broad opened 5 years ago
5
simple-dump or analogous tool

#5 erikenbody closed 5 years ago
3
R script for plotting spectra-cn like histograms

#4 arangrhie closed 5 years ago
1