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marcelauliano
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MitoHiFi
Find, circularise and annotate mitogenome from PacBio assemblies
MIT License
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Python Version
#59
tshori
closed
1 year ago
0
Possible to change "minimum query length = 80% subject length" parameter?
#58
gokalpyildirir
closed
1 year ago
4
potential contigs
#57
jhcaddisfly
closed
1 year ago
1
multicopy genome output
#56
khoojj
closed
1 year ago
1
No gbk.HiFiMapped.bam.filtered.assembled.[a/p]_ctg.gfa file(s). An error may have occurred when assembling reads with HiFiasm
#55
madhubioinfo
opened
1 year ago
14
running test dataset error
#54
madhubioinfo
opened
1 year ago
5
Unable to find reference_tRNA
#53
hangsuUNC
closed
1 year ago
2
reviews
#52
marcelauliano
closed
1 year ago
0
Example data run error: FileNotFoundError: [Errno 2] No such file or directory: 'tig00007572_1.annotation.1.individual.stats'
#51
yangqimeng99
opened
1 year ago
5
Two issues: few reads mapping to reference and no hifiasm results
#50
jokelley
closed
1 year ago
12
KeyError in getGenesList
#49
khoojj
closed
1 year ago
1
You need to run further scripts to check if you have mito reads pulled to a large NUMT !!
#48
vlnaraujo
closed
1 year ago
15
How to assess the quality of my mitochondrial genome assembly?
#47
Neo-xbx-00
closed
1 year ago
0
Readme error
#46
bsierieb1
closed
1 year ago
1
Correct the path for singularity in the tutorial
#45
afoix
closed
1 year ago
1
Gene named in the reference file is not recognized by MitoFinder.
#44
Surbhigrewal
closed
1 year ago
5
Refactored Dockerfile
#43
muffato
closed
1 year ago
1
update dockerfile
#42
rjchallis
closed
1 year ago
0
Rename github-actions-demo.yml to github-actions.yml
#41
marcelauliano
closed
1 year ago
0
Update github-actions-demo.yml
#40
marcelauliano
closed
1 year ago
0
Update github-actions-demo.yml
#39
marcelauliano
closed
1 year ago
0
Create github-actions-demo.yml
#38
marcelauliano
closed
1 year ago
0
Update README.md
#37
marcelauliano
closed
1 year ago
0
Mitohifi v3.0.0
#36
marcelauliano
closed
1 year ago
0
Mitohifi v3.0.0
#35
marcelauliano
closed
1 year ago
0
ValueError: max() arg is an empty sequence
#34
peterdfields
opened
1 year ago
12
WIP: Add GitHub Actions.
#33
junaruga
opened
2 years ago
0
Fixing long string error messages including line breaks and spaces.
#32
junaruga
closed
10 months ago
2
Add error checks to check if the argument FASTA is reads or contig file.
#31
junaruga
closed
2 years ago
2
Preparing small example files to run it for a short time.
#30
junaruga
opened
2 years ago
4
Declare variables outside try scope to fix UnboundLocalError.
#29
junaruga
closed
2 years ago
1
Problem running MitoHiFi with libssl.so.1.0.0
#28
filonico
closed
10 months ago
2
HPC and slurm comparability - Error finding Contig tig00007550_1 does not have an annotation file
#27
ChristophePatterson
opened
2 years ago
4
mitohifi.py: No such file or directory: 'gbk.HiFiMapped.bam.filtered.assembled.p_ctg.gfa'
#26
junaruga
closed
2 years ago
7
singularity use error, can't write
#25
bishopia
opened
2 years ago
8
'parsed_blast.txt' empty due to hifiasm empty result files
#24
athenasyarifa
opened
2 years ago
12
Docker biocontainers update
#23
ksenia-krasheninnikova
closed
2 years ago
0
Shebang on scripts copied to Docker image
#22
brantfaircloth
closed
10 months ago
1
Add `contig_id` argument in main function mode
#21
jgnunes
closed
2 years ago
0
Can I input ONT reads?
#20
002-two
closed
10 months ago
0
Update README.md
#19
c-zhou
closed
2 years ago
0
README changes for MitoHiFi v2.2
#18
ksenia-krasheninnikova
closed
2 years ago
0
Mitohifi v2.2
#17
marcelauliano
closed
2 years ago
0
Updates to findMitoReference
#16
ksenia-krasheninnikova
opened
2 years ago
0
self.pid = _posixsubprocess.fork_exec( TypeError: expected str, bytes or os.PathLike object, not int
#15
safiajanjua
opened
2 years ago
0
plant genome with raw HIFI reads
#14
m-jahani
closed
10 months ago
2
Added Default output name for FindMitoReference
#13
ClaudiaPaetzold
opened
3 years ago
1
replace blast-xml by blast-tab
#12
jgnunes
closed
3 years ago
0
blast xml error
#11
Brent-Saylor-Canopy
closed
1 year ago
9
awk: cannot open gbk.HiFiMapped.bam.filtered.assembled.p_ctg.gfa (No such file or directory)
#10
philge
closed
11 months ago
4
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