marcopavoni chimerascan issues

marcopavoni / chimerascan

Automatically exported from code.google.com/p/chimerascan

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File "/usr/bin/chimerascan_run.py", line 24, in <module>

#26 GoogleCodeExporter opened 8 years ago
0
bowtie-build failed to create alignment index

#25 GoogleCodeExporter opened 8 years ago
2
Different length reads for R1 and R2

#24 GoogleCodeExporter opened 8 years ago
0
easy to fix linker error on some systems including macosx

#23 GoogleCodeExporter opened 8 years ago
0
Crashed with error "'bowtie-build' failed to create breakpoint index"

#22 GoogleCodeExporter opened 8 years ago
3
IOError: [Errno 24] Too many open files:

#21 GoogleCodeExporter opened 8 years ago
0
Detail about output file

#20 GoogleCodeExporter opened 8 years ago
1
CHIMERASCAN 0.4.5 runs for hours then gets killed by my system

#19 GoogleCodeExporter opened 8 years ago
6
Sudden crash during runtime

#18 GoogleCodeExporter opened 8 years ago
0
crash after "Extracting single-mapped reads that may span breakpoints"

#17 GoogleCodeExporter opened 8 years ago
0
Detailed explanation of chimerascan output

#16 GoogleCodeExporter opened 8 years ago
0
csamtools error

#15 GoogleCodeExporter opened 8 years ago
1
new feature? possibility of running the filter chimeras as a stand alone step?

#14 GoogleCodeExporter opened 8 years ago
0
Interconvert between transcriptomic and genomic coordinates

#13 GoogleCodeExporter closed 8 years ago
1
Provide chimeric reads as a BAM file

#12 GoogleCodeExporter closed 8 years ago
1
Fragment size in "detecting discordant reads" step

#11 GoogleCodeExporter closed 8 years ago
4
Test performance with BWA aligner

#10 GoogleCodeExporter closed 8 years ago
1
Add sequences for Poly-A+ tails

#9 GoogleCodeExporter opened 8 years ago
0
chimerascan_html_table.py problem

#8 GoogleCodeExporter closed 8 years ago
1
run from gzipped fastq files

#7 GoogleCodeExporter closed 8 years ago
1
Dynamic read trimming of poor quality reads

#6 GoogleCodeExporter opened 8 years ago
0
Use breakpoint homology to refine junction spanning read counts

#5 GoogleCodeExporter closed 8 years ago
1
Indel and rearrangement calling

#4 GoogleCodeExporter closed 8 years ago
1
Improve localization of 5' and 3' exons

#3 GoogleCodeExporter closed 8 years ago
1
Improvement when joining segments

#2 GoogleCodeExporter closed 8 years ago
1
Support for variable read lengths

#1 GoogleCodeExporter opened 8 years ago
0