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markrobinsonuzh
/
cytofWorkflow
MIT License
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R session aborted
#38
yueli8
closed
4 months ago
7
Error in prepData(fs, panel, md, features = panel$fcs_colname) : Couldn't match 'flowSet'/FCS filenames with those listed in 'md[[md_cols$file]]'.
#37
yueli8
closed
4 months ago
2
how to generate heatmap of clusters x markers, but just for a subset of data
#36
CNicholasMDA
closed
10 months ago
2
download files from zenodo instead of imls-uzh server
#35
markrobinsonuzh
closed
1 year ago
0
Taupo fix
#34
markrobinsonuzh
closed
1 year ago
0
Can't find cytof tutorial anymore
#33
synatkeamsk
closed
1 year ago
4
Data preparation
#32
synatkeamsk
closed
1 year ago
1
FCS files with cluster labels
#31
juniajvs
closed
1 year ago
1
Cell populations in topTable() wrong
#30
LazDaria
closed
1 year ago
6
heatmap color change
#29
haowBio
closed
2 years ago
2
run pipeline with previously transformed data
#28
mflookp
closed
2 years ago
2
Error: package or namespace load failed for ‘HDCytoData’
#27
rohitfarmer
closed
2 years ago
2
Error in Isomap using plotDR
#26
LeleDR
closed
3 years ago
1
Best pre-processing steps for flowSet data
#25
wudustan
closed
3 years ago
1
cluster tree and dendrogram
#24
antoine4ucsd
closed
3 years ago
1
plotClusterExprs memory and data extraction
#23
antoine4ucsd
closed
3 years ago
2
Missing parameters
#22
83years
closed
3 years ago
1
Error in validObject(.Object)
#21
lingzili
closed
4 years ago
3
differential_abundance_wrapper
#20
antoine4ucsd
closed
4 years ago
2
usage of computeSpillmat
#19
calpiko
closed
4 years ago
1
cofactor for arcsinh transformation when a sce object is assembled
#18
sunhuaiyu
closed
4 years ago
8
Issue in the initial steps of data transformation and exploration
#17
sudu87
closed
4 years ago
7
facet_grid with scale_color_gradientn results in incorrect tSNE plots
#16
CNicholasMDA
closed
4 years ago
4
Misc
#15
SamGG
closed
4 years ago
1
Order and labeling of clusters from most to least abundant
#14
CNicholasMDA
closed
4 years ago
1
update plotDiffHeatmap calls
#13
HelenaLC
closed
4 years ago
0
Pre 311
#12
markrobinsonuzh
closed
4 years ago
0
Helena updates
#11
HelenaLC
closed
4 years ago
0
help implementing Phate
#10
83years
closed
4 years ago
3
Producing slightly different results
#9
algebio
closed
4 years ago
2
Removed rows containing missing values (geom_point).
#8
jspegarova
closed
4 years ago
2
Error in md_cols while creating sce
#7
Sa753
closed
4 years ago
1
adding conditions (timepoint, treatment, clinical data) to analysis
#6
CNicholasMDA
closed
4 years ago
1
V4
#5
markrobinsonuzh
closed
5 years ago
0
V4
#4
markrobinsonuzh
closed
5 years ago
0
load ggplot2 to fix error for 'plotDR()' function
#3
lmweber
closed
5 years ago
1
HDCytoData package reference
#2
lmweber
closed
5 years ago
0
Proof edits
#1
markrobinsonuzh
closed
5 years ago
0