marrink-lab bentopy issues

marrink-lab / bentopy

Packs stuff in boxes

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issues

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Voxelization problem

#28 jan-stevens opened 1 month ago
2
Implement an implied default compartment when compartment definitions are omitted

#27 ma3ke opened 1 month ago
0
Behaviour when no compartments are defined

#26 jan-stevens opened 1 month ago
5
Add check subcommand

#25 ma3ke closed 1 month ago
1
Add a `keep` option for setting the segment center

#24 ma3ke opened 1 month ago
0
Add a constraints mechanism and configuration options

#23 ma3ke closed 1 month ago
1
Unexpected behaviour at high density

#22 jan-stevens opened 2 months ago
3
Add grocat subcommand

#21 ma3ke closed 2 months ago
4
Add mask subcommand

#20 ma3ke closed 2 months ago
5
Pack according to domains

#19 ma3ke opened 3 months ago
1
Remove padding scheme and rely on valid mode for convolution

#18 ma3ke closed 3 months ago
2
Periodic boundary conditions

#17 ma3ke opened 3 months ago
0
Remove early padding mechanism

#16 ma3ke closed 3 months ago
0
Rearrange heuristic

#15 ma3ke opened 3 months ago
0
Improve the rotation heuristic

#14 ma3ke opened 3 months ago
0
Add support for defining compartments in input files

#13 ma3ke closed 3 months ago
0
Pre-placement inspection of the packing

#12 ma3ke opened 4 months ago
0
Solvate?

#11 ma3ke opened 4 months ago
0
Create a pure-Python fallback for render

#10 ma3ke opened 4 months ago
0
Add relevant topol_includes to the README example

#9 ma3ke opened 4 months ago
3
Introduce Python bindings for render-placements

#8 ma3ke closed 4 months ago
0
Input of compartments

#7 ma3ke closed 3 months ago
1
Documentation

#6 ma3ke opened 4 months ago
0
Integrate render-placements as a subcommand

#5 ma3ke closed 4 months ago
0
Introduce subcommands to the cli

#4 ma3ke closed 4 months ago
0
Integration example test and tutorial

#3 ma3ke opened 4 months ago
1
Conservative voxelization strategy

#2 ma3ke closed 1 month ago
0
Place segments over partitions of the background to limit memory footprint

#1 ma3ke opened 4 months ago
2