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marschall-lab
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panacus
Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
MIT License
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Validity of results
#32
aaaniich
opened
1 week ago
0
what dose coverage and quorum mean？
#31
peanut-nu
closed
2 weeks ago
3
coverage/quorum
#30
jwli-code
opened
3 weeks ago
1
Calling `panacus hist` with `-s` but then not supplying the subset file cases no error
#29
danydoerr
closed
4 weeks ago
0
Reformat stats command output and add HTML for stats
#28
heringerp
closed
2 weeks ago
0
macOS binary missing
#27
pdoris
closed
1 month ago
1
Merge dev branch into main
#26
heringerp
closed
1 month ago
0
Discrepancy between graph length, reference length, and novel base pairs
#25
CCLittlefield
closed
1 month ago
3
Add installation of Python dependencies to Readme
#24
heringerp
closed
2 months ago
0
Add fix to display sample names in case of ordered-histgrowth
#23
heringerp
closed
2 months ago
0
how is panacus treating Ns
#22
subwaystation
closed
4 months ago
4
panacus-visualize.py is overwhelmed by 1000 haplotypes
#21
subwaystation
closed
3 months ago
10
Haplotype labels in TSV, visualisations ?
#20
blinard-BIOINFO
closed
2 months ago
8
compiler error in rustc-serialize
#19
subwaystation
opened
4 months ago
3
Update Readme to reflect installation of python dependencies in the installation section.
#18
danydoerr
closed
2 months ago
1
A problem while running panacus-visualize
#17
syresbr
closed
6 months ago
1
Feature request: Alternative plot with #nodes/#edges vs AC
#16
tobiasmarschall
opened
7 months ago
0
Request software updates
#15
Xuelei-Dai
closed
7 months ago
6
How to Visualize the results of the minigraph-cactus?
#14
ld9866
closed
8 months ago
21
command is not supported for more than 65534
#13
ld9866
closed
8 months ago
6
Could you please make an new release?
#12
subwaystation
closed
9 months ago
3
Add parameters to output split png files
#11
heringerp
closed
9 months ago
3
Option to output plots in separate PNG files
#10
subwaystation
closed
9 months ago
11
After `panacus hist` and `panacus growth`, the final visualization will show `#nodes` instead of `bps`. I use `-c bp` for hist
#9
danydoerr
closed
11 months ago
1
path coordinates
#8
baozg
closed
12 months ago
8
Merge different chroms stats into one graph
#7
baozg
closed
12 months ago
3
check both start and end for `coords`
#6
AndreaGuarracino
closed
1 year ago
6
Installation instructions
#5
johanneskoester
closed
1 year ago
2
could you give us an example of cactus?
#4
xuxingyubio
closed
1 year ago
7
What does the output content represent
#3
xuxingyubio
closed
1 year ago
7
AttributeError: 'DataFrame' object has no attribute 'cumulative'
#2
subwaystation
closed
1 year ago
13
What is the meaning of common and consensus?
#1
Orz-CQ
closed
1 year ago
4