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matsengrp
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larch
Inference and manipulation of history DAGs
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Ambiguous Samples
#37
willdumm
closed
8 months ago
5
Summary of goals
#36
willdumm
opened
1 year ago
0
Dag view
#35
ognian-
closed
1 year ago
0
Add ua node
#34
ognian-
closed
1 year ago
0
Larch-usher: optimize only a subtree at a time
#33
willdumm
closed
1 year ago
4
SPR radius fix and new ResizeEdgeMutations call
#32
willdumm
closed
1 year ago
1
Uniform sampling
#31
ognian-
closed
1 year ago
2
Counting the number of trees in which each node (or clade) takes part
#30
willdumm
opened
1 year ago
0
Sampling from the DAG's topological fringe
#29
willdumm
opened
1 year ago
0
Sampling from the DAG with probabilities (and constraints)
#28
marybarker
opened
1 year ago
2
Indexing Histories
#27
willdumm
opened
1 year ago
1
Add callback for usher's found moves
#26
ognian-
closed
1 year ago
0
General subtree weight
#25
ognian-
closed
1 year ago
0
Track modifications
#24
ognian-
closed
1 year ago
0
Add all possible edges
#23
marybarker
closed
11 months ago
0
Traversal iterators
#22
ognian-
closed
1 year ago
1
Integrate matOptimize callback
#21
willdumm
closed
1 year ago
3
15 sampling a tree
#20
ognian-
closed
2 years ago
2
14 trimming the dag
#19
ognian-
closed
2 years ago
0
9 consistent clade idxs
#18
ognian-
closed
2 years ago
1
Change reference sequence of MAD
#17
willdumm
opened
2 years ago
0
13 parsimony score
#16
ognian-
closed
2 years ago
0
Sampling a tree from the DAG
#15
willdumm
closed
2 years ago
0
Trimming the DAG
#14
willdumm
closed
2 years ago
0
Calculating best parsimony score in DAG
#13
willdumm
closed
2 years ago
0
Add install target
#12
ognian-
opened
2 years ago
0
WD-Documentation
#11
willdumm
closed
2 years ago
1
Wd documentation
#10
willdumm
closed
2 years ago
1
Consistent child clade indices
#9
willdumm
closed
1 year ago
5
4 read trees via cli
#8
ognian-
closed
2 years ago
1
Initial commit
#7
ognian-
closed
2 years ago
0
Apply individual matOptimize moves to the DAG
#6
matsen
closed
1 year ago
4
more direct integration with matOptimize
#5
matsen
closed
1 year ago
4
read trees via CLI and export to proto
#4
matsen
closed
1 year ago
0
Changes to proto definition
#3
willdumm
closed
1 year ago
0
collapse nodes
#2
matsen
opened
2 years ago
0
load and merge two protobuf trees
#1
matsen
closed
1 year ago
0
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