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matsengrp
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samm
Survival analysis of mutation motifs
GNU General Public License v3.0
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Use all data for shazam
#282
jjfeng
closed
7 years ago
0
Update multiple mutation sconscript
#281
jjfeng
closed
7 years ago
0
Update scons multiple mutations
#280
jjfeng
closed
7 years ago
0
Add plotting updates
#279
jjfeng
closed
7 years ago
0
Remove extra arg
#278
jjfeng
closed
7 years ago
0
Plot error bars
#277
dawahs
closed
6 years ago
0
Plotting default argument bug fix
#276
jjfeng
closed
7 years ago
0
Update shazam to deal with bad mutability estimates
#275
jjfeng
closed
7 years ago
0
Update simulation_section scons
#274
jjfeng
closed
7 years ago
0
Fix simulation shmulate
#273
jjfeng
closed
7 years ago
0
Update simulation comparison of shazam and samm scons
#272
jjfeng
closed
7 years ago
0
Add plotting for shazam hedgehog
#271
jjfeng
closed
7 years ago
0
Pass in information matrix for plotting
#270
jjfeng
closed
7 years ago
0
Fix simulations to use IGKV
#269
jjfeng
closed
7 years ago
2
Partis split by germline family
#268
jjfeng
closed
7 years ago
0
Fix ess calculation
#267
jjfeng
closed
7 years ago
0
Try out splitting validation/training sets by gene rather than allele?
#266
jjfeng
closed
7 years ago
1
Use validation column again for tuning penalty parameters
#265
jjfeng
closed
7 years ago
1
Subsample gibbs
#264
jjfeng
closed
7 years ago
2
Simulated shazam v samm updates
#263
jjfeng
closed
7 years ago
0
How does samm handle SHM indels?
#262
matsen
opened
7 years ago
0
Real simulation code?
#261
jjfeng
closed
7 years ago
0
add init file
#260
jjfeng
closed
7 years ago
0
Clean up dshaw
#259
dawahs
closed
7 years ago
0
Data processing
#258
dawahs
closed
7 years ago
0
Readme cleanup
#257
jjfeng
closed
7 years ago
0
rm old files
#256
jjfeng
closed
7 years ago
0
Cleanup arguments to files
#255
jjfeng
closed
7 years ago
0
Add tutorial
#254
jjfeng
closed
7 years ago
0
label name change
#253
jjfeng
closed
7 years ago
0
Update font size for scatter plot
#252
jjfeng
closed
7 years ago
0
Use seaborn for simulation 3mer plots
#251
jjfeng
closed
7 years ago
3
Plot lowess line and alternate between plotting shazam samm
#250
jjfeng
closed
7 years ago
1
Update the simulation settings and compare script commands
#249
jjfeng
closed
7 years ago
0
Add make compare mult script
#248
jjfeng
closed
7 years ago
0
Compare results when multiple mutations per position allowed
#247
jjfeng
closed
7 years ago
0
Add script for simulation tables comparing shazam and samm
#246
jjfeng
closed
7 years ago
0
Get stats and figures for comparing samm shazam
#245
jjfeng
closed
7 years ago
0
Save aggregated s5f params instead
#244
jjfeng
closed
7 years ago
0
Update scons for simulations with replacement
#243
jjfeng
closed
7 years ago
0
Update imputed ancestors code
#242
dawahs
closed
7 years ago
2
Use correct path for scons
#241
jjfeng
closed
7 years ago
0
Use get hessian flag
#240
jjfeng
closed
7 years ago
1
Add comparison code AND sample seqs correctly!
#239
jjfeng
closed
7 years ago
1
use single penalty param
#238
jjfeng
closed
7 years ago
1
Add partis germline simulator
#237
jjfeng
closed
7 years ago
1
Add R code and sconscript to run shmulate
#236
dawahs
closed
7 years ago
2
Update plotting with jitters
#235
jjfeng
closed
7 years ago
1
load model differently and add target flag
#234
dawahs
closed
7 years ago
0
Add restart partition to srun command
#233
jjfeng
closed
7 years ago
0
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