matsengrp / sumrep

Summary statistics for repertoires
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Clonal clustering for TCR repertoires #37

Open BrandenOlson opened 5 years ago

BrandenOlson commented 5 years ago

It was suggested that we implement a generic clone clustering that just considers each unique (junction_aa, v_call, j_call) triple as a separate clone. This would allow for the calculation of diversity (Hill) numbers for TCR repertoires that lack a clone_id column.