A summary statistic framework for BCR and TCR repertoires
sumrep
is a package for summarizing, visualizing, and comparing immune receptor repertoires.
It contains dozens of different summary statistics to be applied on various levels of assumptions, from raw query reads to inferred phylogenies, as well as easy and principled ways to plot and compare repertoires.
It currently supports the IgH, IgL, IgK, TRA, and TRB loci.
Instructions for getting and using sumrep
can be found via the following pages:
sumrep
in a controlled environmentsumrep
to analyze and gain insights from your data, including examplessumrep
A paper describing sumrep
can be found here.
Please cite this publication if you use sumrep
for your analysis.
Please submit an issue if you encounter a problem not addressed above!