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matthiaskoenig
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fbc_curation
FROG analysis in python for the reproducibility of FBC models
https://runfrog.de
GNU Lesser General Public License v3.0
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Document NaN representation of missing values
#49
matthiaskoenig
opened
2 years ago
0
Document identifiers.org URLS
#48
matthiaskoenig
opened
2 years ago
0
Document and provide JSON schema in documentation
#47
matthiaskoenig
opened
2 years ago
0
Run tasks in task queue
#46
matthiaskoenig
closed
2 years ago
1
Register `runfrog` command
#45
matthiaskoenig
closed
2 years ago
0
Rename package and rebrand
#44
matthiaskoenig
closed
2 years ago
1
Add frog icon
#43
matthiaskoenig
closed
2 years ago
0
Support python 3.9
#42
matthiaskoenig
closed
2 years ago
0
Update dependencies
#41
matthiaskoenig
closed
2 years ago
0
Zenodo metadata
#40
matthiaskoenig
closed
2 years ago
0
Rich logging
#39
matthiaskoenig
closed
2 years ago
0
Add exact solver solution with cobrapy `glpk_exact`
#38
matthiaskoenig
opened
3 years ago
0
Add fraction_optimum column to FVA report
#37
matthiaskoenig
closed
2 years ago
0
Add percentage change for gene and reaction deletion
#36
matthiaskoenig
closed
2 years ago
1
Update from develop
#35
github-actions[bot]
closed
3 years ago
0
Error while running `fbc_curation_examples`
#34
karthikraman
closed
3 years ago
4
additional curation metadata
#33
bgoli
closed
2 years ago
1
metadata extended and less required attributes
#32
bgoli
closed
2 years ago
3
metadata fields
#31
bgoli
closed
2 years ago
2
Update from develop
#30
github-actions[bot]
closed
3 years ago
0
Fix negative values in FVA results
#29
matthiaskoenig
closed
3 years ago
0
Reaction identifiers do not match SBML identifiers in FVA
#28
matthiaskoenig
closed
3 years ago
0
Store infeasible values as NA instead of empty
#27
matthiaskoenig
closed
2 years ago
1
Fix failing CI test
#26
matthiaskoenig
closed
3 years ago
0
Clearly state the percent of optimum in FVA (100%) in documentation
#25
matthiaskoenig
closed
3 years ago
0
FVA should include the reference flux value
#24
matthiaskoenig
closed
3 years ago
0
Use SBML filename in output report
#23
matthiaskoenig
closed
3 years ago
0
Create tool metadata
#22
matthiaskoenig
closed
3 years ago
0
Fix issues with cobrapy 0.19.0
#21
matthiaskoenig
closed
3 years ago
0
FVA result output
#20
bgoli
closed
3 years ago
2
Move to github actions
#19
matthiaskoenig
closed
3 years ago
0
Provide files as JSON (with json schema)
#18
matthiaskoenig
closed
2 years ago
1
Examples are not distributed with pip package
#17
matthiaskoenig
closed
3 years ago
1
Changes for release fbc_curation-v0.1.0
#16
matthiaskoenig
closed
4 years ago
0
Support python 3.8
#15
matthiaskoenig
closed
3 years ago
0
Add webservice for simple creation of the files
#14
matthiaskoenig
closed
2 years ago
0
Add memote report for simple evaluation of results
#13
matthiaskoenig
closed
3 years ago
1
Changes for v0.0.6
#12
matthiaskoenig
closed
4 years ago
1
fbc_curation_example bug
#11
matthiaskoenig
closed
4 years ago
1
Changes for v0.0.5 release
#10
matthiaskoenig
closed
4 years ago
1
Run example on HepatoNet1 & additional examples
#9
matthiaskoenig
closed
3 years ago
0
Unbound errors in biomodels in FVA
#8
matthiaskoenig
closed
4 years ago
2
Add support for omex files as input and output
#7
matthiaskoenig
closed
2 years ago
1
Support multiple objectives
#6
matthiaskoenig
opened
4 years ago
0
Changes for v0.0.4
#5
matthiaskoenig
closed
4 years ago
0
Changes for v0.0.3
#4
matthiaskoenig
closed
4 years ago
1
Example files are not packaged
#3
matthiaskoenig
closed
4 years ago
0
Changes for v0.0.2
#2
matthiaskoenig
closed
4 years ago
1
Changes for v0.0.1 release
#1
matthiaskoenig
closed
4 years ago
0
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