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maxplanck-ie
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nanoporeReads_dataTransfer
A pipeline to transfer the Nanopore reads to end users
MIT License
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update ship_qcreport()
#136
thomasmanke
closed
11 months ago
0
Fix ship_qcreports
#135
thomasmanke
closed
11 months ago
0
fastqc: control memory via config
#134
thomasmanke
closed
11 months ago
0
Fix fastqc memory
#133
thomasmanke
closed
11 months ago
0
Fix read_samplesheet
#132
thomasmanke
closed
11 months ago
0
Fix read samplesheet
#131
thomasmanke
closed
11 months ago
0
Develop
#130
thomasmanke
closed
11 months ago
0
Fix reporting
#129
thomasmanke
closed
11 months ago
0
samtools flagstat encounters older index
#128
thomasmanke
opened
11 months ago
0
fix GPU check: gpu_available()
#127
thomasmanke
opened
11 months ago
0
multiqc and Kraken (with unclassified reads)
#126
thomasmanke
opened
1 year ago
0
barcoding information
#125
thomasmanke
opened
1 year ago
0
Develop
#124
thomasmanke
closed
1 year ago
0
Dorado Rules
#123
thomasmanke
closed
1 year ago
0
Merge pull request #117 from maxplanck-ie/develop
#122
WardDeb
closed
1 year ago
0
porechop and multiqc
#121
thomasmanke
opened
1 year ago
0
fix reporting of "available_storage_perc"
#120
thomasmanke
closed
1 year ago
1
pycoQC failures
#119
thomasmanke
opened
1 year ago
0
Demux with dorado
#118
WardDeb
closed
1 year ago
1
Develop
#117
thomasmanke
closed
1 year ago
1
Manke
#116
thomasmanke
closed
1 year ago
1
pycoQC after alignment
#115
thomasmanke
opened
1 year ago
0
reorganize config dict and utilization
#114
thomasmanke
opened
1 year ago
0
include methylation analysis
#113
thomasmanke
closed
1 year ago
1
Manke
#112
thomasmanke
closed
1 year ago
0
read_flowcell_info(): poddirpass and poddirfail
#111
thomasmanke
closed
1 year ago
1
snakehelper: overwrite_dir()
#110
thomasmanke
closed
11 months ago
1
decluster and compress sequencing_summary*.txt
#109
thomasmanke
opened
1 year ago
0
run multiqc as last step
#108
thomasmanke
closed
1 year ago
1
fix bug in parkour_query and recursive merging of pod5
#107
thomasmanke
closed
1 year ago
0
Manke
#106
thomasmanke
closed
1 year ago
0
Manke
#105
thomasmanke
closed
1 year ago
0
3_qc.smk: swallow kraken output
#104
thomasmanke
closed
1 year ago
0
Manke
#103
thomasmanke
closed
1 year ago
0
uncomment parkour-query hack
#102
thomasmanke
closed
1 year ago
0
add porechop for adapter detection
#101
thomasmanke
closed
1 year ago
0
keep dev up to date
#100
WardDeb
closed
1 year ago
0
updated installation instructions
#99
thomasmanke
closed
1 year ago
0
Manke
#98
thomasmanke
closed
1 year ago
0
Dev ad rn
#97
thomasmanke
closed
1 year ago
0
Mb dev
#96
thomasmanke
closed
1 year ago
0
Added pod5 merge function if fast5 files don't exist. Fixed the footprint ration if fast5 files don't exist
#95
FerallOut
closed
1 year ago
2
Merge pod5s
#94
FerallOut
closed
1 year ago
1
exec/env logging
#93
WardDeb
closed
1 year ago
4
add project ID to e-mail body
#92
adRn-s
closed
1 year ago
0
option to run directly on pod5, besides fast5 files
#91
FerallOut
closed
1 year ago
0
keep dev up to date
#90
WardDeb
closed
1 year ago
0
added memory allocation to fastqc of 4Gb
#89
FerallOut
closed
1 year ago
0
put sample name in the output pod5 file
#88
katsikora
closed
1 year ago
1
omit pod5
#87
WardDeb
closed
1 year ago
0
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