mdozmorov genome_runner issues

mdozmorov / genome_runner

Academic Free License v3.0

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issues

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gr logo on results page has no link

#129 mdozmorov closed 8 years ago
0
Results page is still pinging server every 10 seconds after analysis is completed

#128 lkscara closed 8 years ago
0
Monte-Carlo completely disabled, chisquare runs instead

#127 mdozmorov closed 8 years ago
0
Command line logging output seems disabled - nothing gets outputted

#126 mdozmorov closed 8 years ago
0
Redirect user to shiny interface after annotation analysis is completed

#125 lkscara closed 8 years ago
1
Annotation is broken

#124 mdozmorov closed 8 years ago
2
gzip: stdout: Broken pipe

#123 mdozmorov closed 8 years ago
2
GR ID not being passed to logger

#122 lkscara closed 8 years ago
0
Celery worker adding file handler for each new task being submitted

#121 lkscara closed 8 years ago
0
.tbi files causing problem with custom GFS groups

#120 lkscara closed 8 years ago
0
Web version will not let user submit without selecting a GF group

#119 lkscara closed 8 years ago
1
Search box 'Select/Unselect' buttons don't work

#118 mdozmorov opened 8 years ago
0
Shiny app optimization

#117 mdozmorov closed 8 years ago
0
Download of small runs

#116 mdozmorov closed 8 years ago
1
Differential regulatory analysis does not work

#115 mdozmorov closed 8 years ago
1
Download does not work

#114 mdozmorov closed 8 years ago
1
Weighted enrichment

#113 mdozmorov opened 8 years ago
1
Dynamic width of PDF

#112 mdozmorov closed 8 years ago
0
Speed up MC by checking p-values at each power of 10 step

#111 mdozmorov closed 8 years ago
1
Correct MC p-value when OR < 1

#110 mdozmorov closed 8 years ago
0
Database and gf_Annot todo fixes

#109 mdozmorov opened 8 years ago
1
dbcreator to process individual BED files by score/strand

#108 mdozmorov opened 8 years ago
0
Optimizer script 'gr-optimizer' lacks 'main' attribute

#107 mdozmorov closed 8 years ago
0
Slowness of web app - need for optimization

#106 mdozmorov closed 8 years ago
0
413 Request Entity Too Large

#105 mdozmorov closed 8 years ago
1
setup_cg.sh installation issues

#104 mdozmorov closed 8 years ago
1
When --pass-path is used, no log messages printed in command line

#103 mdozmorov closed 8 years ago
0
Annotation analysis breaks

#102 mdozmorov closed 8 years ago
0
server module missing biocLite

#101 mdozmorov closed 8 years ago
2
Front page, "Uploading files..." always stays on the page

#100 mdozmorov closed 8 years ago
1
Large numbers in scientific format in 'detailed.txt'

#99 mdozmorov closed 8 years ago
0
Upload GFs not working

#98 mdozmorov closed 8 years ago
0
Show header above shiny interface - the navigation line with GenomeRunner logo

#97 lkscara closed 8 years ago
0
"Select/Unselect" button for search function in selecting GFs step is not passing selected GFs to analysis

#96 mdozmorov closed 8 years ago
1
Minor GUI tweaks

#95 mdozmorov closed 8 years ago
0
Heatmap legend use same untransformed values as the y-axis of barplot

#94 lkscara closed 9 years ago
0
dbcreator_encode: K562 bug

#93 mdozmorov opened 9 years ago
4
DB: Trace download issues

#92 mdozmorov closed 9 years ago
0
Prepare GR for release

#91 mdozmorov opened 9 years ago
0
DB: mm9

#90 mdozmorov closed 8 years ago
4
Cell type-specific FDR adjustments

#89 mdozmorov closed 9 years ago
0
Handling negative numbers in 2x2 contingency table

#88 mdozmorov closed 8 years ago
0
dbcreator_encode: double downloading of DNase imputed gapped/narrow

#87 mdozmorov closed 9 years ago
0
dbcreator_encode: output url of the downloaded files

#86 mdozmorov closed 9 years ago
0
Refresh analysis log and detailed while analysis is being performed

#85 lkscara closed 9 years ago
0
Annotation analysis is broken

#84 lkscara closed 8 years ago
2
Calculating p-values

#83 mdozmorov closed 9 years ago
1
Tabix -B option

#82 mdozmorov closed 9 years ago
1
hypergeome4 crashing because when using pre-calculated background stats

#81 lkscara closed 9 years ago
0
DB: FANTOM5 data

#80 mdozmorov closed 8 years ago
0