For the schizophrenia classification paper, we used two sets of SNVs to create two sets of AIOs. The scripts start with "SCZ" in the file names were used to classify these AIOs. For the breast cancer biomarker classification paper, we tested the utility of AIO technique on two biomarkers, Ki67 and Nottightham histologic grade, NHG. The scripts starts with "BC" in the file names were used for the analyses in this paper.