mdshw5 fastqp issues - Githubissues

mdshw5 / fastqp

Simple FASTQ quality assessment using Python

https://pypi.python.org/pypi/fastqp

MIT License

108 stars 14 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Migrate CI/CD to GH Actions

#35 mdshw5 opened 4 months ago
0
Fix axis for qualplot in newer versions of matplotlib

#34 mdshw5 opened 4 months ago
0
ZeroDivisionError: division by zero

#33 seyfim opened 4 years ago
1
not detecting adapter seq

#32 divyoj closed 5 years ago
1
Plotting raises exceptions with matplotlib-2.2.2

#31 unode closed 6 years ago
2
Create CODE_OF_CONDUCT.md

#30 mdshw5 closed 6 years ago
0
README.md tweaks

#29 ucpete closed 6 years ago
1
Handle empty list if there are no bad kmers

#28 ghost closed 6 years ago
0
output text files

#27 macmanes opened 6 years ago
3
An ZeroDivisionError when I run fastqp.py

#26 EnzoAndree closed 6 years ago
8
Update all usages of mpl.rc to mpl.cycler

#25 tomsherborne closed 7 years ago
0
Request module support for ewels/MultiQC

#24 mdshw5 opened 7 years ago
0
Update plots.py to use the new matplotlib cycler

#23 mdshw5 opened 7 years ago
0
Exit early if the file is empty

#22 mdshw5 closed 8 years ago
1
Make --count-duplicates mutually exclusive with downsampling

#21 mdshw5 opened 8 years ago
0
Bug in count-duplicates feature

#20 edurand closed 8 years ago
1
Make pivoted text table by default

#19 mdshw5 closed 8 years ago
3
fastqp stuck with very long consensus fastq file

#18 peterdfields closed 8 years ago
2
Option to ignore reads flagged as "failing" by illumina's base calling

#17 mdshw5 opened 8 years ago
0
Allow QC fail threshold parameters to be set by the user

#16 mdshw5 opened 8 years ago
0
Handle multiple input files as a batch

#15 mdshw5 opened 8 years ago
0
Import of tidy data table into Spotfire

#14 mdshw5 opened 8 years ago
0
Document analysis modules

#13 mdshw5 opened 8 years ago
0
Build wheels for numpy and scipy

#12 mdshw5 opened 8 years ago
0
Match a list of known adapter sequences

#11 mdshw5 closed 8 years ago
2
Use mdshw5/simplesam for Sam and Bam parsing

#10 mdshw5 closed 8 years ago
0
Regression through kmer spectrum to identify outliers

#9 mdshw5 closed 8 years ago
0
Calculate observed/expected ratio for kmers

#8 mdshw5 closed 8 years ago
0
Make plots using plot.ly

#7 mdshw5 closed 8 years ago
0
Add fq as acceptable extension.

#6 danielecook closed 9 years ago
0
Plot cycle-specific kmers

#5 mdshw5 closed 9 years ago
0
Don't rely on dictionary ordering for printing cycle stats

#4 mdshw5 closed 9 years ago
0
Track sequence duplication level using bloom filter

#3 mdshw5 closed 8 years ago
0
Produce M-bias plots for GEMINI reads

#2 mdshw5 closed 10 years ago
0
Summarize methylation statistics from bisulfite DNA-seq libraries

#1 mdshw5 opened 10 years ago
1