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medbioinf / pia

:books: :microscope: PIA - Protein Inference Algorithms
https://github.com/medbioinf/pia
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determination of file type by pre-parsing, not only by suffix #118

Closed julianu closed 5 years ago

codecov-io commented 5 years ago

Codecov Report

Merging #118 into master will increase coverage by 0.59%. The diff coverage is 87.41%.

Impacted file tree graph

@@             Coverage Diff              @@
##             master     #118      +/-   ##
============================================
+ Coverage     50.23%   50.82%   +0.59%     
- Complexity     2176     2243      +67     
============================================
  Files           173      173              
  Lines         17270    17520     +250     
  Branches       2868     2916      +48     
============================================
+ Hits           8675     8905     +230     
- Misses         7685     7693       +8     
- Partials        910      922      +12
Impacted Files Coverage Δ Complexity Δ
...mpiler/parser/searchengines/TideTXTFileParser.java 12.7% <76.92%> (+12.7%) 8 <7> (+8) :arrow_up:
.../pia/intermediate/compiler/parser/MzTabParser.java 79.61% <78.37%> (-0.14%) 76 <11> (+11)
...a/intermediate/compiler/parser/PrideXMLParser.java 71.67% <80.95%> (+0.72%) 48 <2> (+2) :arrow_up:
...e/mpc/pia/modeller/exporter/MzIdentMLExporter.java 73.23% <81.25%> (+0.18%) 117 <2> (+3) :arrow_up:
...ompiler/parser/searchengines/TandemFileParser.java 65.56% <85.29%> (+2.57%) 31 <9> (+9) :arrow_up:
...ediate/compiler/parser/InputFileParserFactory.java 69.56% <86.36%> (-0.95%) 7 <3> (ø)
.../intermediate/compiler/parser/FastaFileParser.java 16.19% <91.66%> (+16.19%) 8 <7> (+8) :arrow_up:
...iler/parser/searchengines/ThermoMSFFileParser.java 65.77% <92.85%> (+0.69%) 58 <1> (+1) :arrow_up:
...ermediate/compiler/parser/MzIdentMLFileParser.java 65.89% <95%> (+1.41%) 79 <6> (+6) :arrow_up:
.../intermediate/compiler/parser/IdXMLFileParser.java 66.07% <95%> (+1.33%) 57 <6> (+6) :arrow_up:
... and 4 more

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