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medbioinf / pia

:books: :microscope: PIA - Protein Inference Algorithms
https://github.com/medbioinf/pia
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Bump ch.qos.logback:logback-core from 1.2.11 to 1.3.12 #198

Closed dependabot[bot] closed 7 months ago

dependabot[bot] commented 7 months ago

⚠️ Dependabot is rebasing this PR ⚠️

Rebasing might not happen immediately, so don't worry if this takes some time.

Note: if you make any changes to this PR yourself, they will take precedence over the rebase.

Bumps ch.qos.logback:logback-core from 1.2.11 to 1.3.12.

Commits
  • 0df4ec1 prepare release 1.3.12
  • 189af50 ensure JDK 8 compatibility
  • 14a71d0 cater for array size marked with -1
  • b8eac23 prevent DOS attacks using on malicious serialized input
  • d87dd12 further support for Virtual threads, issues 737
  • 034aaee add support for Virtual threads
  • d6294e5 parameterizable invocation gate delay
  • 3b91f6d minor refactoring
  • d94ebec fix guthub issue 715
  • c76b303 minor refactoring for better readability
  • Additional commits viewable in compare view


Dependabot compatibility score

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codecov-commenter commented 7 months ago

Codecov Report

Attention: 109 lines in your changes are missing coverage. Please review.

Comparison is base (2221c5c) 61.73% compared to head (e240f2e) 62.04%. Report is 54 commits behind head on main.

Files Patch % Lines
src/main/java/de/mpc/pia/PIACli.java 18.39% 63 Missing and 8 partials :warning:
src/main/java/de/mpc/pia/tools/MzIdentMLTools.java 0.00% 16 Missing :warning:
src/main/java/de/mpc/pia/JsonAnalysis.java 36.36% 7 Missing :warning:
src/main/java/de/mpc/pia/modeller/PSMModeller.java 33.33% 5 Missing and 1 partial :warning:
.../pia/modeller/report/filter/RegisteredFilters.java 50.00% 3 Missing and 1 partial :warning:
...ermediate/compiler/parser/MzIdentMLFileParser.java 75.00% 1 Missing and 2 partials :warning:
...main/java/de/mpc/pia/modeller/PeptideModeller.java 50.00% 0 Missing and 1 partial :warning:
...main/java/de/mpc/pia/modeller/ProteinModeller.java 0.00% 0 Missing and 1 partial :warning:

:exclamation: Your organization needs to install the Codecov GitHub app to enable full functionality.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #198 +/- ## ============================================ + Coverage 61.73% 62.04% +0.31% - Complexity 2490 2493 +3 ============================================ Files 140 139 -1 Lines 14958 14901 -57 Branches 2641 2634 -7 ============================================ + Hits 9234 9246 +12 + Misses 4668 4598 -70 - Partials 1056 1057 +1 ``` | [Flag](https://app.codecov.io/gh/medbioinf/pia/pull/198/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None) | Coverage Δ | | |---|---|---| | [unittests](https://app.codecov.io/gh/medbioinf/pia/pull/198/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None) | `62.04% <27.81%> (+0.31%)` | :arrow_up: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#carryforward-flags-in-the-pull-request-comment) to find out more.

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dependabot[bot] commented 7 months ago

OK, I won't notify you again about this release, but will get in touch when a new version is available. If you'd rather skip all updates until the next major or minor version, let me know by commenting @dependabot ignore this major version or @dependabot ignore this minor version.

If you change your mind, just re-open this PR and I'll resolve any conflicts on it.